Variant report

Variant	rs4698414
Chromosome Location	chr4:15738973-15738974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15655679..15657937-chr4:15737188..15739918,2	K562	blood:

Variant related genes	Relation type
ENSG00000118564	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10007824	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10034735	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4283655	1.00[ASN][1000 genomes]
rs4326008	0.80[MEX][hapmap];0.80[AMR][1000 genomes]
rs4613560	0.83[AMR][1000 genomes]
rs7699180	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4698414	LAP3	cis	cerebellum	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15707400-15742800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:15708800-15739400	Weak transcription	Ovary	ovary
3	chr4:15723000-15743000	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr4:15723000-15744600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr4:15726000-15740200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:15727400-15740400	Weak transcription	Fetal Intestine Large	intestine
7	chr4:15729000-15743200	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:15733600-15742800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr4:15735400-15739000	Weak transcription	Fetal Intestine Small	intestine
10	chr4:15735400-15742800	Weak transcription	Primary hematopoietic stem cells	blood
11	chr4:15735800-15740200	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr4:15736400-15739000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr4:15736400-15739200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:15736600-15739000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr4:15737400-15739000	Weak transcription	Fetal Thymus	thymus
16	chr4:15737800-15739200	Enhancers	Primary B cells from peripheral blood	blood
17	chr4:15737800-15740400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:15738400-15742600	Enhancers	Dnd41	blood
19	chr4:15738600-15739400	Enhancers	Thymus	Thymus
20	chr4:15738800-15739200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:15738800-15739800	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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