Variant report

Variant	rs4698420
Chromosome Location	chr4:15820180-15820181
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10805347	0.81[CHB][hapmap];0.82[JPT][hapmap]
rs3756241	0.81[ASN][1000 genomes]
rs3775954	0.82[ASN][1000 genomes]
rs3796863	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4516711	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6449190	0.82[JPT][hapmap]
rs6836946	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6841880	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7670690	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9291638	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15810800-15821600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr4:15811400-15827000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr4:15811400-15851200	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:15811400-15852200	Weak transcription	Spleen	Spleen
5	chr4:15811600-15821600	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr4:15811800-15842200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr4:15812200-15840000	Strong transcription	Dnd41	blood
8	chr4:15813800-15834600	Weak transcription	Psoas Muscle	Psoas
9	chr4:15818000-15821000	Strong transcription	Primary T cells from cord blood	blood
10	chr4:15818000-15821600	Strong transcription	Primary B cells from cord blood	blood
11	chr4:15818200-15821000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:15818200-15821200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr4:15818400-15821000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:15818600-15820200	Strong transcription	Primary hematopoietic stem cells	blood
15	chr4:15818600-15821200	Strong transcription	Primary B cells from peripheral blood	blood
16	chr4:15818800-15821200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:15819000-15820600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:15819000-15821200	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr4:15819200-15820800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
20	chr4:15819200-15853400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:15819400-15820200	Enhancers	H1 Cell Line	embryonic stem cell
22	chr4:15819400-15820600	Strong transcription	Primary T cells fromperipheralblood	blood
23	chr4:15819400-15820600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr4:15819400-15820800	ZNF genes & repeats	Thymus	Thymus
25	chr4:15819600-15820400	ZNF genes & repeats	Fetal Thymus	thymus
26	chr4:15819800-15820600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
27	chr4:15820000-15820600	Strong transcription	Primary T helper cells PMA-I stimulated	--

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