Variant report

Variant	rs4698771
Chromosome Location	chr4:110554013-110554014
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11938222	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2003464	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110533000-110573000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:110546000-110559600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr4:110546200-110566400	Weak transcription	Fetal Thymus	thymus
4	chr4:110546600-110580600	Weak transcription	Thymus	Thymus
5	chr4:110548000-110554200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
6	chr4:110550600-110569200	Weak transcription	GM12878-XiMat	blood
7	chr4:110553000-110565600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:110553200-110554200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:110553200-110556200	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr4:110553200-110556400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr4:110553200-110559800	Weak transcription	Right Atrium	heart
12	chr4:110553200-110560000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr4:110553200-110561600	Weak transcription	Primary B cells from peripheral blood	blood
14	chr4:110553200-110561800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr4:110553200-110565200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr4:110553200-110566200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr4:110553200-110566800	Weak transcription	Primary B cells from cord blood	blood
18	chr4:110553400-110554200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:110553400-110559600	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr4:110553600-110560400	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:110553800-110557200	Weak transcription	Primary T cells from cord blood	blood
22	chr4:110553800-110560600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:110553800-110562000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr4:110554000-110558400	Weak transcription	Primary hematopoietic stem cells	blood

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