Variant report

Variant	rs4698953
Chromosome Location	chr4:106913001-106913002
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4235417	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4367177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4611932	0.93[AMR][1000 genomes]
rs62320065	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6813109	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv522792	chr4:106895964-106982793	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106907800-106925000	Weak transcription	Pancreas	Pancrea
2	chr4:106909800-106913200	Enhancers	HUVEC	blood vessel
3	chr4:106910000-106913200	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr4:106910000-106913400	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr4:106910400-106913400	Enhancers	Fetal Muscle Leg	muscle
6	chr4:106910600-106913200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr4:106910600-106913200	Enhancers	Fetal Heart	heart
8	chr4:106910600-106913200	Enhancers	Fetal Stomach	stomach
9	chr4:106910600-106913200	Enhancers	HSMM	muscle
10	chr4:106910800-106913200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr4:106910800-106913200	Enhancers	Psoas Muscle	Psoas
12	chr4:106910800-106913200	Enhancers	HSMMtube	muscle
13	chr4:106911200-106914000	Enhancers	Adipose Nuclei	Adipose
14	chr4:106911400-106913200	Enhancers	Esophagus	oesophagus
15	chr4:106911400-106913200	Enhancers	Left Ventricle	heart
16	chr4:106911400-106913200	Enhancers	Spleen	Spleen
17	chr4:106911400-106913400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr4:106912000-106913200	Enhancers	Fetal Muscle Trunk	muscle
19	chr4:106912000-106913200	Enhancers	Lung	lung
20	chr4:106912000-106913200	Enhancers	Stomach Smooth Muscle	stomach
21	chr4:106912000-106915400	Weak transcription	Colon Smooth Muscle	Colon
22	chr4:106912400-106913600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:106912400-106920800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr4:106912600-106913600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr4:106912600-106915200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr4:106913000-106913200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:106913000-106913400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr4:106913000-106919200	Weak transcription	Aorta	Aorta
29	chr4:106913000-106919600	Weak transcription	Right Atrium	heart

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