Variant report
| Variant | rs4699265 |
|---|---|
| Chromosome Location | chr4:95351758-95351759 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:95351455..95354558-chr4:95356271..95359431,3 | K562 | blood: | |
| 2 | chr4:95349675..95353068-chr4:95354670..95357771,4 | K562 | blood: | |
| 3 | chr4:95349675..95351898-chr4:95353469..95356244,2 | K562 | blood: | |
| 4 | chr4:95351346..95353018-chr4:95371268..95373317,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000163110 | Chromatin interaction |
| ENSG00000203436 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10011690 | 0.82[EUR][1000 genomes] |
| rs10011765 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1593555 | 0.81[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs1896117 | 0.90[EUR][1000 genomes] |
| rs1896118 | 0.90[EUR][1000 genomes] |
| rs1960282 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs2902981 | 0.90[EUR][1000 genomes] |
| rs4359908 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4699834 | 0.89[AMR][1000 genomes] |
| rs4699848 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs4699849 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4699851 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs55770704 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs56020558 | 0.82[EUR][1000 genomes] |
| rs59408296 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60613894 | 0.82[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs60852827 | 0.90[EUR][1000 genomes] |
| rs66649743 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs67100471 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs67192700 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs67524120 | 0.82[EUR][1000 genomes] |
| rs67798520 | 0.90[EUR][1000 genomes] |
| rs67843621 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs72667605 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv993495 | chr4:94992315-95482578 | Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv594901 | chr4:95254730-95493246 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv1003743 | chr4:95255957-95469831 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:95349400-95352200 | Enhancers | HepG2 | liver |
| 2 | chr4:95350600-95352200 | Enhancers | Skeletal Muscle Female | skeletal muscle |
