Variant report

Variant	rs4699351
Chromosome Location	chr4:99496018-99496019
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99494205..99497159-chr4:99499484..99501729,2	MCF-7	breast:
2	chr4:99495926..99497504-chr4:99501942..99504413,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17027701	0.87[AMR][1000 genomes]
rs17027731	0.95[ASN][1000 genomes]
rs4554081	1.00[CHB][hapmap];0.95[ASN][1000 genomes]
rs4699347	0.87[AMR][1000 genomes]
rs4699649	0.82[AMR][1000 genomes]
rs4699653	0.85[AMR][1000 genomes]
rs4699655	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6532743	0.82[AMR][1000 genomes]
rs7679987	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs7691924	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99466800-99501600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:99479000-99506400	Weak transcription	Aorta	Aorta
3	chr4:99483400-99498800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:99485000-99501400	Weak transcription	HUVEC	blood vessel
5	chr4:99487200-99500000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr4:99487800-99498600	Weak transcription	NHLF	lung
7	chr4:99488000-99499000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr4:99488000-99499200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:99488200-99500200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:99489000-99498800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:99490200-99499000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:99490400-99499200	Weak transcription	Brain Germinal Matrix	brain
13	chr4:99490600-99498600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:99490600-99498800	Weak transcription	Stomach Mucosa	stomach
15	chr4:99490600-99501400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr4:99490800-99499600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:99490800-99499800	Weak transcription	Right Atrium	heart
18	chr4:99490800-99506600	Weak transcription	Esophagus	oesophagus
19	chr4:99490800-99509000	Weak transcription	HSMM	muscle
20	chr4:99491000-99503400	Weak transcription	Thymus	Thymus
21	chr4:99492000-99496200	Weak transcription	NHDF-Ad	bronchial
22	chr4:99492000-99498600	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:99492000-99499200	Weak transcription	Osteobl	bone
24	chr4:99492400-99498800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr4:99492600-99497200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:99492600-99498600	Weak transcription	Brain Anterior Caudate	brain
27	chr4:99492600-99499800	Weak transcription	Spleen	Spleen
28	chr4:99492600-99500200	Weak transcription	Fetal Brain Female	brain
29	chr4:99492600-99501800	Weak transcription	Primary B cells from cord blood	blood
30	chr4:99492800-99497800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr4:99493200-99501400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:99493600-99498800	Weak transcription	Brain Hippocampus Middle	brain
33	chr4:99493600-99500400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr4:99493600-99501400	Weak transcription	Fetal Thymus	thymus
35	chr4:99493800-99498800	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr4:99494000-99499200	Weak transcription	Fetal Lung	lung
37	chr4:99494200-99498600	Weak transcription	Brain Angular Gyrus	brain
38	chr4:99494200-99498600	Weak transcription	Brain Substantia Nigra	brain
39	chr4:99495000-99496200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:99495000-99496200	Strong transcription	Primary T cells from cord blood	blood
41	chr4:99495000-99496200	Strong transcription	NH-A	brain
42	chr4:99495000-99496600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr4:99495200-99496200	Enhancers	Fetal Heart	heart
44	chr4:99495200-99498600	Weak transcription	Fetal Kidney	kidney
45	chr4:99495200-99500200	Weak transcription	HMEC	breast
46	chr4:99495400-99496200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr4:99495400-99496200	Strong transcription	Primary T cells fromperipheralblood	blood
48	chr4:99495400-99496200	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:99495400-99496200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:99495400-99496800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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