Variant report

Variant	rs4699648
Chromosome Location	chr4:99461552-99461553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99460334..99463092-chr4:99464059..99466192,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10002696	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10006366	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10006430	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10025051	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11097619	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11730384	0.84[EUR][1000 genomes]
rs13108940	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13123700	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs1528547	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1534554	0.84[ASN][1000 genomes]
rs1534555	0.84[ASN][1000 genomes]
rs1573478	0.84[ASN][1000 genomes]
rs1919210	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1919211	0.95[EUR][1000 genomes]
rs2037832	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs28886705	0.86[ASN][1000 genomes]
rs4447870	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4699343	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4699344	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4699345	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4699348	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4699639	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4699640	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4699644	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4699646	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6532748	0.91[EUR][1000 genomes]
rs6815038	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6823547	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6847124	0.87[ASN][1000 genomes]
rs71600251	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9760870	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99445200-99461800	Weak transcription	HMEC	breast
2	chr4:99445400-99465400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:99446000-99467400	Weak transcription	Fetal Stomach	stomach
4	chr4:99446800-99461600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:99449400-99464200	Weak transcription	Fetal Brain Female	brain
6	chr4:99449800-99467400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr4:99450200-99467400	Weak transcription	Osteobl	bone
8	chr4:99450400-99461800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr4:99450400-99465200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:99450800-99468000	Weak transcription	HSMM	muscle
11	chr4:99458200-99465400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:99458800-99464400	Enhancers	Ovary	ovary
13	chr4:99459000-99468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:99459200-99462000	Weak transcription	Fetal Intestine Small	intestine
15	chr4:99459200-99465000	Weak transcription	Fetal Brain Male	brain
16	chr4:99459200-99468000	Weak transcription	Esophagus	oesophagus
17	chr4:99459200-99479600	Weak transcription	Spleen	Spleen
18	chr4:99459400-99461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:99459600-99465000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:99459600-99465400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr4:99459600-99465400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr4:99459600-99466000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:99459600-99467800	Weak transcription	NHLF	lung
24	chr4:99459800-99461800	Weak transcription	Brain Hippocampus Middle	brain
25	chr4:99459800-99462000	Weak transcription	Brain Angular Gyrus	brain
26	chr4:99459800-99465400	Weak transcription	Brain Anterior Caudate	brain
27	chr4:99460200-99463400	Weak transcription	Fetal Heart	heart
28	chr4:99460600-99463400	Enhancers	Cortex derived primary cultured neurospheres	brain
29	chr4:99461000-99467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr4:99461200-99461600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr4:99461200-99461600	Weak transcription	Brain Substantia Nigra	brain
32	chr4:99461200-99464200	Enhancers	NHEK	skin
33	chr4:99461200-99465400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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