Variant report

Variant	rs4699661
Chromosome Location	chr4:99534928-99534929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10020677	0.81[CHB][hapmap]
rs10428298	0.84[ASN][1000 genomes]
rs11941870	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs11946198	0.81[CHB][hapmap];0.80[CHD][hapmap]
rs12501391	0.85[ASN][1000 genomes]
rs12504979	0.87[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs12507537	0.98[ASN][1000 genomes]
rs12509046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12509170	0.87[CHB][hapmap];0.89[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs28531755	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28711692	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4699356	0.81[CHD][hapmap]
rs4699660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699662	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6819238	0.81[CHD][hapmap]
rs6846265	0.87[CHB][hapmap];0.85[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs6848644	0.85[ASN][1000 genomes]
rs6852645	0.85[ASN][1000 genomes]
rs7700024	0.85[ASN][1000 genomes]
rs7700032	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4699661	ADH5	cis	cerebellum	SCAN

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99523000-99545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:99524000-99535400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:99527200-99541000	Weak transcription	NHLF	lung
4	chr4:99529200-99535400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:99529200-99535400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:99529200-99537800	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr4:99529400-99535000	Enhancers	Brain Substantia Nigra	brain
8	chr4:99529400-99536200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:99529400-99536400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr4:99529400-99536400	Enhancers	Brain Angular Gyrus	brain
11	chr4:99529400-99536600	Enhancers	Fetal Brain Male	brain
12	chr4:99529400-99539800	Enhancers	Brain Hippocampus Middle	brain
13	chr4:99529600-99535600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr4:99529600-99535800	Enhancers	Brain Anterior Caudate	brain
15	chr4:99529600-99542400	Enhancers	Brain Cingulate Gyrus	brain
16	chr4:99529600-99543200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:99529800-99536400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr4:99529800-99538600	Weak transcription	Lung	lung
19	chr4:99530000-99535400	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:99530000-99540600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:99530400-99537400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:99530400-99538400	Weak transcription	HUVEC	blood vessel
23	chr4:99530600-99535600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:99530800-99537400	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:99531000-99538000	Enhancers	NH-A	brain
26	chr4:99531000-99538600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr4:99531000-99544200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr4:99531200-99536800	Enhancers	Fetal Heart	heart
29	chr4:99531200-99541400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:99531400-99538800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr4:99531800-99536200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:99532000-99535000	Enhancers	NHDF-Ad	bronchial
33	chr4:99532000-99538600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr4:99532400-99538600	Weak transcription	Gastric	stomach
35	chr4:99532400-99538800	Weak transcription	Right Ventricle	heart
36	chr4:99532600-99535400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr4:99532600-99545400	Weak transcription	HMEC	breast
38	chr4:99532800-99535600	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr4:99532800-99536000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr4:99533000-99535200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr4:99533000-99535400	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr4:99533000-99535600	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr4:99533200-99536000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr4:99533400-99536200	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:99533600-99535600	Enhancers	Colon Smooth Muscle	Colon
46	chr4:99533600-99538600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:99533800-99535000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr4:99533800-99535000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:99533800-99535400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr4:99533800-99535600	Enhancers	Primary T helper cells PMA-I stimulated	--

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