Variant report

Variant	rs4700302
Chromosome Location	chr5:57919442-57919443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs158974	0.86[JPT][hapmap]
rs169705	0.86[JPT][hapmap]
rs292970	0.86[JPT][hapmap]
rs292971	0.80[JPT][hapmap]
rs292985	0.84[JPT][hapmap]
rs377601	0.81[JPT][hapmap]
rs380850	0.86[JPT][hapmap]
rs393390	0.80[JPT][hapmap]
rs393400	0.81[JPT][hapmap]
rs413605	0.81[JPT][hapmap]
rs433188	0.81[JPT][hapmap]
rs435514	0.81[JPT][hapmap]
rs441085	0.81[JPT][hapmap]
rs442414	0.81[JPT][hapmap]
rs449867	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1029145	chr5:57905821-58141221	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830311	chr5:57912546-58105636	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57918000-57919600	Enhancers	Left Ventricle	heart
2	chr5:57918000-57919800	Enhancers	Fetal Lung	lung
3	chr5:57918400-57924400	Weak transcription	Small Intestine	intestine
4	chr5:57918600-57919800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:57918800-57919800	Enhancers	Ovary	ovary
6	chr5:57918800-57920200	Enhancers	Fetal Stomach	stomach
7	chr5:57919000-57919600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:57919000-57919800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr5:57919200-57919600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:57919200-57919600	Enhancers	Fetal Heart	heart
11	chr5:57919200-57919800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:57919200-57920000	Weak transcription	Right Atrium	heart
13	chr5:57919200-57924200	Weak transcription	Stomach Mucosa	stomach
14	chr5:57919400-57919600	Flanking Active TSS	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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