Variant report

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11954668	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1445948	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1471429	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1471430	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1824157	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1838733	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2409631	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28862729	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67196739	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67526430	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6858946	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6888028	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6897568	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs765182	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7717303	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1025807	chr5:58520050-58548231	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv520721	chr5:58520735-58558388	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv320857	chr5:58543868-58543869	Weak transcription Enhancers Genic enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58527400-58549800	Weak transcription	Aorta	Aorta
2	chr5:58535600-58551800	Weak transcription	HUVEC	blood vessel
3	chr5:58537600-58548600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr5:58537600-58553000	Weak transcription	Duodenum Mucosa	Duodenum
5	chr5:58541000-58545400	Enhancers	Rectal Smooth Muscle	rectum
6	chr5:58541200-58558400	Weak transcription	Pancreas	Pancrea
7	chr5:58541600-58560000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr5:58541600-58562400	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr5:58541800-58562800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr5:58542200-58544400	Enhancers	Fetal Heart	heart
11	chr5:58542200-58551600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:58542600-58544400	Enhancers	Fetal Kidney	kidney
13	chr5:58542600-58544400	Genic enhancers	Hela-S3	cervix
14	chr5:58542600-58548600	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:58542800-58545200	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr5:58543200-58544400	Weak transcription	Colon Smooth Muscle	Colon
17	chr5:58543200-58545800	Genic enhancers	A549	lung
18	chr5:58543200-58552400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr5:58543600-58544400	Enhancers	Left Ventricle	heart
20	chr5:58543600-58544400	Enhancers	Psoas Muscle	Psoas
21	chr5:58543600-58552200	Weak transcription	Fetal Intestine Large	intestine
22	chr5:58543800-58544000	Weak transcription	Fetal Lung	lung

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