Variant report

Variant	rs4700465
Chromosome Location	chr5:61348807-61348808
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13178972	0.96[ASN][1000 genomes]
rs1816098	0.96[ASN][1000 genomes]
rs1833871	0.96[ASN][1000 genomes]
rs1862587	0.89[ASN][1000 genomes]
rs1972651	0.80[AMR][1000 genomes]
rs2032876	0.94[ASN][1000 genomes]
rs2100035	0.91[ASN][1000 genomes]
rs2342991	0.96[ASN][1000 genomes]
rs4235489	0.94[ASN][1000 genomes]
rs4407583	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4470716	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4699996	0.91[ASN][1000 genomes]
rs4699999	0.93[ASN][1000 genomes]
rs4700454	0.91[ASN][1000 genomes]
rs4700455	0.91[ASN][1000 genomes]
rs4700466	0.83[ASN][1000 genomes]
rs6449573	0.96[ASN][1000 genomes]
rs6449577	0.96[ASN][1000 genomes]
rs6896815	0.94[ASN][1000 genomes]
rs7726251	0.89[ASN][1000 genomes]
rs7736993	0.94[ASN][1000 genomes]
rs867492	0.94[ASN][1000 genomes]
rs9885479	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020693	chr5:61098865-61357032	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1024090	chr5:61258759-61921150	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv881725	chr5:61265820-61376320	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv508363	chr5:61287078-61362885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv830317	chr5:61298840-61478113	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:61338800-61355000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:61346400-61351000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr5:61346600-61353200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:61346800-61364400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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