Variant report

Variant	rs4700746
Chromosome Location	chr5:178379681-178379682
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11739784	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11740462	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2016198	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4700765	0.85[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4700972	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4700979	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs67428898	0.89[ASN][1000 genomes]
rs7701540	0.90[ASN][1000 genomes]
rs9784706	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369000-178380200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
3	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
4	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:178374600-178380400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr5:178374800-178380000	Weak transcription	Brain Angular Gyrus	brain
7	chr5:178375600-178381600	Weak transcription	Right Ventricle	heart
8	chr5:178375600-178381800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr5:178375600-178385800	Weak transcription	Osteobl	bone
10	chr5:178375800-178379800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr5:178375800-178381800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr5:178376800-178383400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
13	chr5:178376800-178383600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr5:178377000-178383600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr5:178378000-178383400	ZNF genes & repeats	Adipose Nuclei	Adipose
16	chr5:178378200-178380200	Weak transcription	Aorta	Aorta
17	chr5:178378400-178380600	ZNF genes & repeats	Fetal Kidney	kidney
18	chr5:178378600-178380000	Weak transcription	Left Ventricle	heart
19	chr5:178378600-178380400	Weak transcription	Pancreas	Pancrea
20	chr5:178378600-178380800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
21	chr5:178378800-178380000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr5:178378800-178380000	Weak transcription	Fetal Heart	heart
23	chr5:178378800-178380000	Weak transcription	Fetal Muscle Leg	muscle
24	chr5:178378800-178380200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr5:178378800-178380400	Weak transcription	Colon Smooth Muscle	Colon
26	chr5:178379000-178379800	Weak transcription	Fetal Lung	lung
27	chr5:178379000-178380000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr5:178379000-178380000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr5:178379000-178380000	Weak transcription	Brain Substantia Nigra	brain
30	chr5:178379000-178380200	Weak transcription	Brain Germinal Matrix	brain
31	chr5:178379000-178380400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr5:178379000-178380800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:178379000-178381800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr5:178379000-178387400	ZNF genes & repeats	Ovary	ovary
35	chr5:178379200-178380000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr5:178379600-178379800	Strong transcription	Stomach Smooth Muscle	stomach

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