Variant report

Variant	rs4701636
Chromosome Location	chr5:15645615-15645616
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10039391	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap]
rs1108419	1.00[CHB][hapmap]
rs1120759	1.00[CHB][hapmap]
rs13176349	0.94[ASN][1000 genomes]
rs1429030	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs1429031	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16867528	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16867548	0.82[ASN][1000 genomes]
rs16867713	1.00[CHB][hapmap]
rs2459500	1.00[CHB][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs4413532	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4587075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4701640	0.85[ASN][1000 genomes]
rs4701644	1.00[CHB][hapmap]
rs4702088	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4702089	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4702091	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702092	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4702094	0.89[ASN][1000 genomes]
rs4702095	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.94[ASN][1000 genomes]
rs4702096	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4702097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4702104	1.00[CHB][hapmap];1.00[GIH][hapmap]
rs4702106	1.00[CHB][hapmap]
rs496319	1.00[CHB][hapmap]
rs57092120	0.85[ASN][1000 genomes]
rs57755609	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57833436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59821040	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60543964	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60892211	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73068992	0.92[ASN][1000 genomes]
rs7717109	1.00[YRI][hapmap]
rs7725848	1.00[YRI][hapmap]
rs878963	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15627600-15648000	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:15635600-15646800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr5:15638200-15647400	Weak transcription	Brain Angular Gyrus	brain
4	chr5:15638600-15646600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr5:15638600-15647400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:15639400-15646600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr5:15640600-15646600	Weak transcription	Brain Hippocampus Middle	brain
8	chr5:15640600-15655600	Weak transcription	Brain Anterior Caudate	brain
9	chr5:15641400-15647400	Weak transcription	Fetal Stomach	stomach
10	chr5:15642600-15646600	Enhancers	Right Ventricle	heart
11	chr5:15642600-15648400	Enhancers	Fetal Heart	heart
12	chr5:15643200-15646800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:15643400-15646600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:15643800-15646200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr5:15644400-15655800	Weak transcription	Brain Substantia Nigra	brain
16	chr5:15644600-15646000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr5:15644600-15646200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr5:15644600-15646200	Flanking Active TSS	Dnd41	blood
19	chr5:15644600-15646600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr5:15644600-15646800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr5:15644600-15647000	Enhancers	NHDF-Ad	bronchial
22	chr5:15644800-15645800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr5:15644800-15645800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr5:15644800-15645800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:15644800-15646200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr5:15644800-15646200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr5:15644800-15646200	Enhancers	Right Atrium	heart
28	chr5:15644800-15646200	Enhancers	HSMM	muscle
29	chr5:15644800-15646400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
30	chr5:15644800-15646600	Enhancers	H1 Cell Line	embryonic stem cell
31	chr5:15644800-15646800	Enhancers	HUES64 Cell Line	embryonic stem cell
32	chr5:15644800-15648800	Enhancers	Left Ventricle	heart
33	chr5:15645000-15645800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:15645000-15646000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr5:15645000-15646000	Enhancers	Adipose Nuclei	Adipose
36	chr5:15645000-15646200	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr5:15645000-15646600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
38	chr5:15645000-15646600	Enhancers	Psoas Muscle	Psoas
39	chr5:15645200-15646400	Weak transcription	Colon Smooth Muscle	Colon
40	chr5:15645200-15646600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr5:15645200-15647800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr5:15645400-15646000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr5:15645400-15646000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
44	chr5:15645400-15646200	Enhancers	NH-A	brain
45	chr5:15645400-15648200	Enhancers	Aorta	Aorta
46	chr5:15645600-15645800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:15645600-15645800	Enhancers	Osteobl	bone
48	chr5:15645600-15646000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
49	chr5:15645600-15646000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chr5:15645600-15646000	Enhancers	Brain Cingulate Gyrus	brain

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