Variant report

Variant	rs4702058
Chromosome Location	chr5:14853635-14853636
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14851792..14853991-chr5:14869985..14871997,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154122	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs2401985	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018187	chr5:14385164-15127103	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv830212	chr5:14784197-14966683	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
3	esv2753381	chr5:14814900-14882800	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
4	esv2755533	chr5:14814900-14882800	Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
5	esv2755538	chr5:14814900-14927500	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14811600-14861200	Weak transcription	Colonic Mucosa	Colon
2	chr5:14820600-14854800	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr5:14824800-14869600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:14827800-14854600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:14828800-14856200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr5:14830400-14866400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr5:14831000-14870400	Weak transcription	Spleen	Spleen
8	chr5:14835600-14869000	Weak transcription	NHDF-Ad	bronchial
9	chr5:14835800-14864200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:14837400-14869400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr5:14839200-14859800	Weak transcription	Aorta	Aorta
12	chr5:14840200-14864600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:14844800-14869200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:14848800-14861800	Weak transcription	Adipose Nuclei	Adipose
15	chr5:14848800-14870000	Weak transcription	Thymus	Thymus
16	chr5:14849000-14855000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:14849200-14869800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr5:14850200-14854800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr5:14850200-14856400	Enhancers	Fetal Intestine Large	intestine
20	chr5:14850400-14861600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr5:14850400-14861600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr5:14850600-14861200	Weak transcription	Liver	Liver
23	chr5:14850600-14863000	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr5:14850800-14854800	Weak transcription	Esophagus	oesophagus
25	chr5:14850800-14855000	Weak transcription	Lung	lung
26	chr5:14850800-14855000	Weak transcription	Hela-S3	cervix
27	chr5:14850800-14856200	Enhancers	Fetal Intestine Small	intestine
28	chr5:14850800-14861200	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr5:14850800-14869000	Weak transcription	Brain Germinal Matrix	brain
30	chr5:14851400-14854800	Weak transcription	Right Ventricle	heart
31	chr5:14851400-14855000	Enhancers	Duodenum Mucosa	Duodenum
32	chr5:14851400-14855200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr5:14851400-14855400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr5:14851400-14856600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:14851400-14860200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr5:14851400-14861400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:14851400-14863000	Weak transcription	Brain Anterior Caudate	brain
38	chr5:14851400-14863200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr5:14851600-14855000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr5:14851600-14855000	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr5:14851600-14856400	Weak transcription	Osteobl	bone
42	chr5:14851600-14859600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr5:14851600-14860000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr5:14851600-14860000	Weak transcription	Pancreas	Pancrea
45	chr5:14851600-14861800	Weak transcription	Brain Cingulate Gyrus	brain
46	chr5:14851600-14869800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr5:14851800-14854800	Weak transcription	Placenta	Placenta
48	chr5:14851800-14854800	Weak transcription	Stomach Mucosa	stomach
49	chr5:14851800-14855000	Weak transcription	Primary T cells from cord blood	blood
50	chr5:14851800-14855000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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