Variant report

Variant	rs4703710
Chromosome Location	chr5:75783886-75783887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75780957..75782518-chr5:75783488..75786045,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10035371	0.98[EUR][1000 genomes]
rs10035441	0.92[CEU][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.91[EUR][1000 genomes]
rs13153728	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13154264	1.00[CEU][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13158404	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13172341	0.92[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4516832	0.88[ASN][1000 genomes]
rs6884352	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7711417	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4703710	FCHO2	cis	parietal	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75769600-75816600	Weak transcription	Primary B cells from cord blood	blood
2	chr5:75775000-75785800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr5:75775600-75787600	Weak transcription	Gastric	stomach
4	chr5:75776200-75784600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:75776200-75785800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:75776200-75787600	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr5:75776200-75801000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:75776400-75791200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr5:75776400-75800200	Weak transcription	Primary T cells from cord blood	blood
10	chr5:75776800-75784800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:75776800-75791000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr5:75778000-75785800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:75778400-75793200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:75779200-75785600	Weak transcription	Brain Germinal Matrix	brain
15	chr5:75779800-75784800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:75779800-75784800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr5:75780000-75784400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr5:75780200-75784600	Weak transcription	Spleen	Spleen
19	chr5:75780200-75786200	Weak transcription	Fetal Intestine Small	intestine
20	chr5:75780200-75786200	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr5:75780200-75787400	Weak transcription	Placenta	Placenta
22	chr5:75780400-75788000	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr5:75780800-75786800	Weak transcription	Primary hematopoietic stem cells	blood
24	chr5:75780800-75793400	Weak transcription	Small Intestine	intestine
25	chr5:75781000-75786000	Weak transcription	Duodenum Mucosa	Duodenum
26	chr5:75781000-75787400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:75781200-75784600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:75781200-75786200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr5:75781600-75784600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:75781600-75784600	Weak transcription	HepG2	liver
31	chr5:75781600-75784800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr5:75781600-75784800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:75781600-75784800	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr5:75781600-75785800	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:75781600-75786000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr5:75781600-75786200	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr5:75781600-75787600	Weak transcription	Colonic Mucosa	Colon
38	chr5:75781800-75784800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr5:75782000-75784400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr5:75782600-75784800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr5:75782600-75786000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr5:75782800-75785800	Weak transcription	Stomach Mucosa	stomach
43	chr5:75783200-75784000	Enhancers	Liver	Liver
44	chr5:75783400-75784000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
45	chr5:75783400-75784000	Enhancers	Fetal Lung	lung
46	chr5:75783400-75785600	Enhancers	HUES48 Cell Line	embryonic stem cell
47	chr5:75783400-75785600	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr5:75783400-75785800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
49	chr5:75783400-75786200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr5:75783400-75786600	Enhancers	H1 Cell Line	embryonic stem cell

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