Variant report

Variant	rs4704610
Chromosome Location	chr5:79411248-79411249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79410679..79412376-chr5:79415875..79417383,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12520301	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1470025	0.92[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2164993	0.83[CHB][hapmap];0.81[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap]
rs2405135	0.94[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4703799	0.95[ASN][1000 genomes]
rs4703800	0.87[CHB][hapmap];0.88[ASN][1000 genomes]
rs4704615	0.90[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv598744	chr5:79388745-79423347	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv516093	chr5:79411248-79412328	Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79389400-79412200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr5:79389800-79411800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:79402400-79412200	Weak transcription	Left Ventricle	heart
4	chr5:79403000-79413000	Weak transcription	Dnd41	blood
5	chr5:79404800-79412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr5:79406200-79411600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr5:79406200-79421000	Weak transcription	Right Ventricle	heart
8	chr5:79406600-79411800	Weak transcription	Fetal Muscle Leg	muscle
9	chr5:79406600-79412200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:79406600-79413000	Weak transcription	Ovary	ovary
11	chr5:79406800-79415200	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:79407400-79424000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:79407600-79412200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr5:79408000-79411600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:79408000-79412400	Weak transcription	Pancreas	Pancrea
16	chr5:79409000-79413000	Strong transcription	Primary T cells from cord blood	blood
17	chr5:79409400-79413000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr5:79409400-79413000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr5:79409400-79417600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:79409800-79420800	Weak transcription	Thymus	Thymus
21	chr5:79410000-79411800	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr5:79410000-79430800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr5:79410200-79417400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr5:79410400-79413400	Weak transcription	Fetal Intestine Small	intestine
25	chr5:79410400-79414000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr5:79410600-79412400	Enhancers	Fetal Heart	heart
27	chr5:79411000-79411400	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr5:79411000-79411800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr5:79411000-79413000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr5:79411000-79413200	Weak transcription	Fetal Thymus	thymus
31	chr5:79411000-79413800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
32	chr5:79411200-79413600	Weak transcription	Fetal Lung	lung

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