Variant report

Variant	rs4704653
Chromosome Location	chr5:79547600-79547601
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:79477424..79481349-chr5:79546234..79548720,3	MCF-7	breast:
2	chr5:79521252..79524016-chr5:79546932..79549730,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7726700	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:131 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79540800-79548000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr5:79541200-79548600	Enhancers	Liver	Liver
3	chr5:79542400-79550400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr5:79543000-79548200	Weak transcription	Fetal Brain Female	brain
5	chr5:79543200-79548200	Enhancers	Primary T cells fromperipheralblood	blood
6	chr5:79543400-79547600	Weak transcription	Thymus	Thymus
7	chr5:79543600-79547800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:79543600-79548000	Weak transcription	Right Ventricle	heart
9	chr5:79543600-79548200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:79543600-79548400	Weak transcription	Fetal Brain Male	brain
11	chr5:79543600-79549000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:79543600-79549000	Weak transcription	Fetal Stomach	stomach
13	chr5:79543600-79549200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:79543600-79549200	Weak transcription	Ovary	ovary
15	chr5:79543600-79550600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr5:79543800-79547600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr5:79543800-79548000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr5:79543800-79548000	Weak transcription	Lung	lung
19	chr5:79543800-79548200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr5:79543800-79548400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:79543800-79549000	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr5:79543800-79549000	Weak transcription	Left Ventricle	heart
23	chr5:79543800-79549000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr5:79543800-79549200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:79543800-79549400	Weak transcription	Spleen	Spleen
26	chr5:79543800-79549800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr5:79544000-79548800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr5:79544000-79549000	Weak transcription	Fetal Muscle Leg	muscle
29	chr5:79544200-79547600	Weak transcription	Colonic Mucosa	Colon
30	chr5:79544200-79547600	Weak transcription	Pancreas	Pancrea
31	chr5:79544200-79548200	Weak transcription	Fetal Heart	heart
32	chr5:79544200-79549000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr5:79544200-79549000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr5:79544200-79549000	Weak transcription	Right Atrium	heart
35	chr5:79544200-79549200	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr5:79544200-79549400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:79544200-79550200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr5:79544200-79550400	Weak transcription	HSMM	muscle
39	chr5:79544200-79550600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr5:79544400-79547600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr5:79544400-79547800	Weak transcription	Fetal Thymus	thymus
42	chr5:79544400-79548200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr5:79544400-79548800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr5:79544400-79548800	Weak transcription	Colon Smooth Muscle	Colon
45	chr5:79544400-79549000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr5:79544400-79550000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr5:79544400-79550600	Weak transcription	Hela-S3	cervix
48	chr5:79544600-79547600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr5:79544600-79547600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr5:79544600-79547800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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