Variant report

Variant	rs4705210
Chromosome Location	chr5:147244701-147244702
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11167999	0.84[AMR][1000 genomes]
rs1157507	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28788866	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4705209	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021356	chr5:147103627-147310531	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1033907	chr5:147109014-147309076	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv537916	chr5:147109014-147309076	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv3334831	chr5:147165950-147339765	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv933308	chr5:147173804-147269006	Enhancers Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:147234200-147262400	Weak transcription	Right Atrium	heart
2	chr5:147238600-147248800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:147239800-147245600	Genic enhancers	HUES6 Cell Line	embryonic stem cell
4	chr5:147239800-147248600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr5:147240000-147248800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr5:147240400-147248600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:147242600-147245200	Genic enhancers	H1 Cell Line	embryonic stem cell
8	chr5:147243400-147248800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:147243600-147246000	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:147243800-147248600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:147244200-147247000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr5:147244200-147247200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:147244200-147248600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:147244600-147245200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr5:147244600-147245600	Strong transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:147244600-147245600	Strong transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:147244600-147246000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr5:147244600-147247200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr5:147244600-147247400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr5:147244600-147248800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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