Variant report

Variant	rs4705628
Chromosome Location	chr5:113492841-113492842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10045738	0.85[EUR][1000 genomes]
rs10066191	0.88[EUR][1000 genomes]
rs10078772	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11747036	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17350454	0.90[EUR][1000 genomes]
rs17429055	0.89[EUR][1000 genomes]
rs4260657	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4272124	0.85[EUR][1000 genomes]
rs4365834	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4368718	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4416597	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4519916	0.85[EUR][1000 genomes]
rs4537051	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4583880	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4612056	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4705487	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705488	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705625	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4705626	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62382864	0.89[EUR][1000 genomes]
rs6594791	0.85[EUR][1000 genomes]
rs6594793	0.89[EUR][1000 genomes]
rs6871846	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6873105	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6873190	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6875528	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6879669	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7720919	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7721332	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7721339	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9326911	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1020064	chr5:113418512-113492951	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	esv2763899	chr5:113474771-113533857	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv599432	chr5:113486177-113561766	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113487600-113493000	Weak transcription	H9 Cell Line	embryonic stem cell

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