Variant report

Variant	rs4706042
Chromosome Location	chr6:78805388-78805389
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12192291	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12212103	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1331791	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1591000	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1854940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2026957	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2225493	0.90[EUR][1000 genomes]
rs2225494	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4706685	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4706686	0.91[EUR][1000 genomes]
rs6927502	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6928123	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6928564	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7775561	0.91[EUR][1000 genomes]
rs9294097	0.91[EUR][1000 genomes]
rs9361377	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016961	chr6:78352231-79003866	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538326	chr6:78352231-79003866	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv949682	chr6:78355600-79002515	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1809182	chr6:78676019-78905264	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv886233	chr6:78754264-78911267	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2758064	chr6:78795880-79193468	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2759447	chr6:78795880-79193468	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:78804200-78805600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr6:78804400-78805600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:78805000-78805400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr6:78805000-78805400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:78805200-78806000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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