Variant report

Variant	rs4706153
Chromosome Location	chr6:82744616-82744617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10455398	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1361690	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1418304	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1418305	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1573033	0.99[EUR][1000 genomes]
rs1832870	0.99[EUR][1000 genomes]
rs1891345	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2323649	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4706151	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4706919	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6911435	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6939743	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7775010	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034389	chr6:82721569-82746599	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82732400-82748600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:82740600-82748600	Weak transcription	Left Ventricle	heart
3	chr6:82740600-82749400	Weak transcription	Right Atrium	heart
4	chr6:82740600-82750200	Weak transcription	HepG2	liver
5	chr6:82743000-82748600	Weak transcription	Right Ventricle	heart
6	chr6:82743600-82750000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:82744200-82746000	Weak transcription	Fetal Lung	lung
8	chr6:82744200-82750000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr6:82744200-82750000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:82744200-82750000	Weak transcription	Aorta	Aorta
11	chr6:82744200-82753400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:82744400-82749400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:82744400-82750000	Weak transcription	Fetal Heart	heart
14	chr6:82744600-82746600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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