Variant report

Variant	rs4709115
Chromosome Location	chr6:166864855-166864856
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2235293	0.91[AMR][1000 genomes]
rs3752924	0.91[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs3799672	0.91[AMR][1000 genomes]
rs4709114	1.00[AMR][1000 genomes]
rs4710046	0.91[AMR][1000 genomes]
rs4710047	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7758770	1.00[AMR][1000 genomes]
rs7759671	0.91[AMR][1000 genomes]
rs7765704	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs873089	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3490076	chr6:166727901-167306743	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
2	esv3490077	chr6:166727901-167306743	Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
3	nsv886937	chr6:166830696-166922813	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886938	chr6:166859725-166904398	Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv886939	chr6:166859725-166922813	Strong transcription ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:166808200-166911800	Weak transcription	Psoas Muscle	Psoas
2	chr6:166824000-166901400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:166825200-166875800	Weak transcription	Colonic Mucosa	Colon
4	chr6:166827000-166873400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:166827600-166867200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:166830000-166866600	Weak transcription	Fetal Intestine Large	intestine
7	chr6:166833200-166879000	Weak transcription	NH-A	brain
8	chr6:166833400-166879000	Weak transcription	HSMM	muscle
9	chr6:166834000-166866400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:166834200-166879400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:166843000-166865200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:166844200-166865200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:166846000-166881000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:166848800-166865200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:166850200-166865200	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr6:166850200-166870000	Weak transcription	Right Atrium	heart
17	chr6:166857800-166865200	Strong transcription	Fetal Muscle Trunk	muscle
18	chr6:166858000-166865000	Strong transcription	Skeletal Muscle Male	skeletal muscle
19	chr6:166858000-166865200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:166860600-166865000	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr6:166860600-166865200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr6:166861000-166865000	Strong transcription	Fetal Lung	lung
23	chr6:166861400-166873800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:166862000-166871600	Weak transcription	HMEC	breast
25	chr6:166862200-166869400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:166862400-166871000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:166862400-166871000	Weak transcription	NHDF-Ad	bronchial
28	chr6:166862400-166873800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:166862400-166900600	Weak transcription	Primary T cells from cord blood	blood
30	chr6:166862400-166920600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr6:166862600-166867200	Weak transcription	Adipose Nuclei	Adipose
32	chr6:166862600-166870000	Weak transcription	Osteobl	bone
33	chr6:166862600-166870800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr6:166862600-166871600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:166862600-166878800	Weak transcription	Brain Substantia Nigra	brain
36	chr6:166862600-166879400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:166862600-166883000	Weak transcription	Aorta	Aorta
38	chr6:166862600-166883000	Weak transcription	Duodenum Mucosa	Duodenum
39	chr6:166862800-166866000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr6:166862800-166869400	Weak transcription	Left Ventricle	heart
41	chr6:166862800-166870200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:166862800-166871600	Weak transcription	Liver	Liver
43	chr6:166862800-166873800	Weak transcription	Spleen	Spleen
44	chr6:166862800-166878000	Weak transcription	HSMMtube	muscle
45	chr6:166863000-166865000	ZNF genes & repeats	Fetal Stomach	stomach
46	chr6:166863000-166865200	ZNF genes & repeats	Brain Germinal Matrix	brain
47	chr6:166863200-166865200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:166863200-166866800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:166863200-166867200	Weak transcription	Brain Hippocampus Middle	brain
50	chr6:166863200-166869000	Weak transcription	Primary neutrophils fromperipheralblood	blood

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