Variant report

Variant	rs4709339
Chromosome Location	chr6:159911564-159911565
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11964102	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12333204	0.98[ASN][1000 genomes]
rs13215914	0.98[ASN][1000 genomes]
rs16890419	0.96[ASN][1000 genomes]
rs16890423	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123165	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341625	0.96[ASN][1000 genomes]
rs2341626	0.96[ASN][1000 genomes]
rs2341627	0.98[ASN][1000 genomes]
rs2341628	0.98[ASN][1000 genomes]
rs4431465	0.98[ASN][1000 genomes]
rs4479966	0.95[ASN][1000 genomes]
rs4554341	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4634488	0.96[ASN][1000 genomes]
rs4708830	0.98[ASN][1000 genomes]
rs4708833	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4708834	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4709332	0.98[ASN][1000 genomes]
rs4709333	0.98[ASN][1000 genomes]
rs4709338	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4709341	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57541589	0.96[ASN][1000 genomes]
rs62438468	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913852	0.96[ASN][1000 genomes]
rs6914036	0.98[ASN][1000 genomes]
rs6941120	0.93[ASN][1000 genomes]
rs720692	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7738744	0.96[ASN][1000 genomes]
rs7740788	0.98[ASN][1000 genomes]
rs7748399	0.98[ASN][1000 genomes]
rs7748779	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9295102	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456407	0.83[ASN][1000 genomes]
rs9456412	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9456415	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457648	0.80[ASN][1000 genomes]
rs9457651	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9457653	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457655	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457656	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457657	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9457658	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9457664	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv886800	chr6:159905527-159985424	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159904800-159916800	Weak transcription	Aorta	Aorta
2	chr6:159910800-159912600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr6:159911000-159912600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr6:159911000-159912600	Enhancers	Stomach Smooth Muscle	stomach
5	chr6:159911000-159913200	Enhancers	Adipose Nuclei	Adipose
6	chr6:159911200-159912000	Enhancers	Duodenum Smooth Muscle	Duodenum
7	chr6:159911200-159912000	Enhancers	Stomach Mucosa	stomach
8	chr6:159911200-159912200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:159911200-159912200	Bivalent Enhancer	Fetal Stomach	stomach
10	chr6:159911200-159912400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:159911400-159912000	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:159911400-159912200	Enhancers	Fetal Muscle Trunk	muscle

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