Variant report

Variant	rs4709943
Chromosome Location	chr6:165896934-165896935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12055415	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3417270	chr6:165682773-166023032	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv886928	chr6:165722345-166197889	Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830863	chr6:165803464-165970091	Strong transcription Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv516359	chr6:165877431-165901124	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528284	chr6:165877431-165909462	Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1027811	chr6:165883001-165985711	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538533	chr6:165883001-165985711	Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165857400-165919400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:165882400-165899400	Weak transcription	HSMM	muscle
3	chr6:165883000-165902200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:165883400-165910400	Weak transcription	Hela-S3	cervix
5	chr6:165885200-165901000	Weak transcription	Gastric	stomach
6	chr6:165891800-165902000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr6:165892000-165897800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:165892200-165902000	Weak transcription	HSMMtube	muscle
9	chr6:165892800-165897600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr6:165892800-165897600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr6:165892800-165897800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:165892800-165897800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr6:165893400-165899600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:165894200-165897800	Weak transcription	Spleen	Spleen
15	chr6:165895800-165897800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:165895800-165898400	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:165896400-165899400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr6:165896600-165897200	Enhancers	Fetal Heart	heart
19	chr6:165896600-165897800	Weak transcription	Fetal Lung	lung
20	chr6:165896600-165899800	Weak transcription	Brain Anterior Caudate	brain
21	chr6:165896600-165900000	Weak transcription	Left Ventricle	heart
22	chr6:165896800-165897800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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