Variant report

Variant	rs4711155
Chromosome Location	chr6:27446446-27446447
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:27445180..27448158-chr6:27859004..27861721,2	K562	blood:
2	chr6:27356379..27358071-chr6:27446132..27448857,2	K562	blood:
3	chr6:27440158..27442625-chr6:27445156..27448200,3	MCF-7	breast:
4	chr6:27444748..27447549-chr6:27506733..27508413,2	K562	blood:
5	chr6:27217841..27219766-chr6:27445858..27447970,2	K562	blood:
6	chr6:27436780..27444180-chr6:27444326..27451609,21	K562	blood:
7	chr6:27445237..27448966-chr6:27511451..27515137,4	K562	blood:
8	chr6:27444529..27447552-chr6:27720507..27722383,3	K562	blood:
9	chr6:27439314..27444184-chr6:27444600..27448871,6	MCF-7	breast:
10	chr6:27445186..27449983-chr6:27468978..27472948,6	K562	blood:
11	chr6:27445490..27447467-chr6:27449850..27451759,2	K562	blood:
12	chr6:27445490..27447223-chr6:27448748..27451759,4	K562	blood:
13	chr6:27444179..27448029-chr6:27462358..27468433,6	K562	blood:
14	chr6:27445045..27447586-chr6:27780627..27782678,2	MCF-7	breast:
15	chr6:27434893..27436769-chr6:27444407..27446972,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000233224	Chromatin interaction
ENSG00000096654	Chromatin interaction
ENSG00000197153	Chromatin interaction
ENSG00000112812	Chromatin interaction
ENSG00000124613	Chromatin interaction
ENSG00000196331	Chromatin interaction
ENSG00000182611	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10946915	0.88[AMR][1000 genomes]
rs12526495	0.86[AMR][1000 genomes]
rs12529756	0.91[ASN][1000 genomes]
rs2064093	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2205829	0.91[ASN][1000 genomes]
rs2393962	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2393963	0.91[ASN][1000 genomes]
rs2393964	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4711152	0.89[AMR][1000 genomes]
rs4711154	1.00[ASN][1000 genomes]
rs4713098	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4713099	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7761966	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv883508	chr6:27434220-27455625	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4711155	ZNF391	cis	lung	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27441400-27446800	Weak transcription	Spleen	Spleen
2	chr6:27445000-27447800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:27445000-27448000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:27445000-27448000	Active TSS	NHLF	lung
5	chr6:27445200-27448000	Active TSS	H9 Cell Line	embryonic stem cell
6	chr6:27445400-27446600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr6:27445400-27447800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:27445400-27448000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:27445400-27448000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:27445400-27448000	Active TSS	Rectal Smooth Muscle	rectum
11	chr6:27445600-27446600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr6:27445600-27446600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
13	chr6:27445600-27446600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr6:27445600-27446800	Bivalent/Poised TSS	Fetal Brain Male	brain
15	chr6:27445600-27448000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr6:27445600-27448000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr6:27445600-27448000	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr6:27445600-27448000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:27445800-27446600	Flanking Active TSS	Primary T cells from cord blood	blood
20	chr6:27445800-27446600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr6:27445800-27446600	Flanking Active TSS	Liver	Liver
22	chr6:27445800-27446600	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr6:27445800-27446600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
24	chr6:27445800-27446600	Flanking Active TSS	NHEK	skin
25	chr6:27445800-27447600	Active TSS	Sigmoid Colon	Sigmoid Colon
26	chr6:27445800-27447800	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr6:27445800-27447800	Active TSS	Fetal Stomach	stomach
28	chr6:27445800-27447800	Active TSS	Right Ventricle	heart
29	chr6:27445800-27448000	Active TSS	ES-I3 Cell Line	embryonic stem cell
30	chr6:27445800-27448000	Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr6:27445800-27448000	Active TSS	iPS-18 Cell Line	embryonic stem cell
32	chr6:27445800-27448000	Active TSS	iPS-20b Cell Line	embryonic stem cell
33	chr6:27445800-27448000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
34	chr6:27445800-27448000	Active TSS	Aorta	Aorta
35	chr6:27445800-27448000	Active TSS	Brain Hippocampus Middle	brain
36	chr6:27445800-27448000	Active TSS	Fetal Muscle Trunk	muscle
37	chr6:27445800-27448000	Active TSS	Ovary	ovary
38	chr6:27445800-27448000	Active TSS	Right Atrium	heart
39	chr6:27445800-27448200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:27446000-27446600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr6:27446000-27446600	Flanking Active TSS	Fetal Muscle Leg	muscle
42	chr6:27446000-27446600	Flanking Active TSS	Fetal Thymus	thymus
43	chr6:27446000-27446600	Flanking Active TSS	Stomach Mucosa	stomach
44	chr6:27446000-27446600	Flanking Active TSS	Thymus	Thymus
45	chr6:27446000-27446600	Flanking Active TSS	HMEC	breast
46	chr6:27446000-27446600	Flanking Active TSS	HUVEC	blood vessel
47	chr6:27446000-27447400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr6:27446000-27447600	Active TSS	Muscle Satellite Cultured Cells	--
49	chr6:27446000-27447600	Active TSS	Brain Germinal Matrix	brain
50	chr6:27446000-27447800	Active TSS	ES-WA7 Cell Line	embryonic stem cell

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