Variant report

Variant	rs4711205
Chromosome Location	chr6:11223383-11223384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11221506..11223468-chr6:11470746..11472901,2	MCF-7	breast:
2	chr6:11222489..11224264-chr6:11387362..11389387,2	MCF-7	breast:
3	chr6:11213657..11217222-chr6:11219207..11223440,6	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10947036	0.86[AFR][1000 genomes]
rs10947037	0.86[AFR][1000 genomes]
rs12200095	0.85[AFR][1000 genomes]
rs12215491	0.85[AFR][1000 genomes]
rs2281874	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2327332	0.85[AFR][1000 genomes]
rs7769173	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11211600-11229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:11211800-11229200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr6:11213000-11223600	Enhancers	Fetal Lung	lung
4	chr6:11214200-11224400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:11215400-11224000	Weak transcription	HSMMtube	muscle
6	chr6:11215400-11224600	Weak transcription	Esophagus	oesophagus
7	chr6:11215400-11232000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:11216200-11224600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr6:11216200-11228800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:11216400-11229600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr6:11216600-11223400	Weak transcription	NHDF-Ad	bronchial
12	chr6:11216600-11228800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr6:11216600-11229000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:11216600-11231800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:11216800-11224800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:11217800-11229400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:11218400-11224600	Weak transcription	Ovary	ovary
18	chr6:11219200-11224400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr6:11219200-11228800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr6:11219600-11224000	Genic enhancers	GM12878-XiMat	blood
21	chr6:11219800-11223600	Enhancers	Stomach Mucosa	stomach
22	chr6:11219800-11225800	Enhancers	Fetal Heart	heart
23	chr6:11220000-11223400	Weak transcription	Psoas Muscle	Psoas
24	chr6:11220000-11224600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr6:11220000-11228600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr6:11220000-11229200	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr6:11220000-11230800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr6:11220200-11224000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:11220600-11223400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr6:11220600-11226200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
31	chr6:11220600-11229400	Weak transcription	Colon Smooth Muscle	Colon
32	chr6:11220800-11223800	Weak transcription	Osteobl	bone
33	chr6:11220800-11228800	Weak transcription	Fetal Intestine Large	intestine
34	chr6:11220800-11229200	Weak transcription	Fetal Intestine Small	intestine
35	chr6:11221000-11224000	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:11221000-11224200	Weak transcription	NHLF	lung
37	chr6:11221000-11228800	Weak transcription	Brain Cingulate Gyrus	brain
38	chr6:11221000-11229200	Enhancers	Fetal Brain Male	brain
39	chr6:11221000-11229400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr6:11221200-11224000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr6:11221200-11224400	Weak transcription	Fetal Kidney	kidney
42	chr6:11221200-11224600	Enhancers	HUVEC	blood vessel
43	chr6:11221200-11229600	Weak transcription	HSMM	muscle
44	chr6:11221400-11224000	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
45	chr6:11221800-11223400	Enhancers	Pancreas	Pancrea
46	chr6:11221800-11223400	Enhancers	Small Intestine	intestine
47	chr6:11221800-11223600	Enhancers	Primary hematopoietic stem cells short term culture	blood
48	chr6:11221800-11224600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:11221800-11224600	Enhancers	Primary T cells fromperipheralblood	blood
50	chr6:11221800-11224600	Enhancers	Adipose Nuclei	Adipose

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