Variant report

Variant	rs4711288
Chromosome Location	chr6:11435875-11435876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11433709..11436638-chr6:11494109..11496934,3	MCF-7	breast:
2	chr6:11427951..11430915-chr6:11435068..11437007,2	MCF-7	breast:
3	chr6:11434133..11437259-chr6:11439593..11442090,3	MCF-7	breast:
4	chr6:11413490..11417171-chr6:11433636..11437714,3	MCF-7	breast:
5	chr6:11229128..11232149-chr6:11433876..11436826,3	MCF-7	breast:
6	chr6:11423621..11427169-chr6:11433589..11436531,3	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4476816	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380276	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11425600-11436200	Enhancers	Adipose Nuclei	Adipose
2	chr6:11428000-11438000	Weak transcription	Esophagus	oesophagus
3	chr6:11431000-11439200	Weak transcription	Primary B cells from cord blood	blood
4	chr6:11432000-11436000	Weak transcription	Lung	lung
5	chr6:11432600-11438000	Weak transcription	Left Ventricle	heart
6	chr6:11433600-11436400	Enhancers	Duodenum Mucosa	Duodenum
7	chr6:11433800-11436000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:11433800-11436000	Enhancers	Liver	Liver
9	chr6:11433800-11436200	Enhancers	Fetal Intestine Large	intestine
10	chr6:11434200-11436200	Enhancers	Colonic Mucosa	Colon
11	chr6:11434200-11436200	Flanking Active TSS	A549	lung
12	chr6:11434400-11436400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:11434600-11436200	Enhancers	Fetal Lung	lung
14	chr6:11434600-11436200	Enhancers	Pancreas	Pancrea
15	chr6:11434600-11437800	Weak transcription	HUVEC	blood vessel
16	chr6:11434800-11436200	Enhancers	Psoas Muscle	Psoas
17	chr6:11434800-11438200	Enhancers	Aorta	Aorta
18	chr6:11435200-11436200	Enhancers	Gastric	stomach
19	chr6:11435200-11436200	Flanking Active TSS	Stomach Mucosa	stomach
20	chr6:11435200-11441000	Weak transcription	Fetal Brain Male	brain
21	chr6:11435400-11437800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:11435400-11438000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:11435400-11438200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:11435600-11436000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:11435600-11436200	Enhancers	Hela-S3	cervix
26	chr6:11435600-11436600	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr6:11435600-11437800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr6:11435600-11438000	Weak transcription	Right Atrium	heart
29	chr6:11435600-11438000	Weak transcription	HMEC	breast
30	chr6:11435600-11438000	Weak transcription	NHDF-Ad	bronchial
31	chr6:11435600-11438000	Weak transcription	NHLF	lung
32	chr6:11435600-11438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:11435600-11438200	Weak transcription	HSMMtube	muscle
34	chr6:11435600-11438200	Weak transcription	Osteobl	bone
35	chr6:11435600-11439200	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:11435800-11436400	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr6:11435800-11436800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr6:11435800-11436800	Weak transcription	Placenta	Placenta
39	chr6:11435800-11437600	Enhancers	HepG2	liver
40	chr6:11435800-11437800	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:11435800-11438000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:11435800-11438000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:11435800-11438000	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr6:11435800-11438200	Weak transcription	NH-A	brain
45	chr6:11435800-11438400	Weak transcription	Small Intestine	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links