Variant report

Variant	rs4711512
Chromosome Location	chr6:37744963-37744964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:37742631..37746387-chr6:37760505..37763552,3	MCF-7	breast:
2	chr6:37744756..37747522-chr6:37749501..37752437,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12200258	0.82[CEU][hapmap]
rs12211981	0.89[CEU][hapmap]
rs12213835	0.89[CEU][hapmap]
rs13210701	0.86[CEU][hapmap]
rs259686	0.85[CEU][hapmap]
rs259689	0.89[CEU][hapmap]
rs259690	0.86[CEU][hapmap]
rs259691	0.86[CEU][hapmap]
rs259713	0.89[CEU][hapmap]
rs2645107	0.82[CEU][hapmap]
rs2842517	0.84[CEU][hapmap]
rs4714105	0.83[ASN][1000 genomes]
rs6458029	0.86[CEU][hapmap]
rs6941057	0.92[CEU][hapmap];0.82[CHB][hapmap]
rs9296232	0.89[CEU][hapmap]
rs9394460	0.89[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37731600-37751000	Weak transcription	Psoas Muscle	Psoas
2	chr6:37740800-37750400	Weak transcription	Fetal Brain Male	brain
3	chr6:37742400-37750800	Weak transcription	Liver	Liver
4	chr6:37744000-37745800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:37744000-37745800	Enhancers	Fetal Muscle Leg	muscle
6	chr6:37744000-37748400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
7	chr6:37744000-37748600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr6:37744200-37745000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr6:37744200-37745800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:37744200-37745800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
11	chr6:37744200-37748200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:37744400-37745000	Weak transcription	Placenta	Placenta
13	chr6:37744400-37745200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr6:37744400-37745400	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:37744400-37745400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
16	chr6:37744400-37745400	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
17	chr6:37744400-37745600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:37744400-37745800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr6:37744400-37748600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:37744400-37750800	Weak transcription	Right Atrium	heart
21	chr6:37744600-37745000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:37744600-37745800	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
23	chr6:37744800-37745000	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
24	chr6:37744800-37745000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
25	chr6:37744800-37747800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr6:37744800-37749200	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links