Variant report

Variant	rs4711777
Chromosome Location	chr6:44154325-44154326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:44152056..44154771-chr6:44158466..44160359,2	K562	blood:
2	chr6:44152776..44155726-chr6:44156919..44159966,5	K562	blood:
3	chr6:44153829..44155944-chr6:44169533..44171240,2	K562	blood:
4	chr6:44152401..44154524-chr6:44279508..44281257,2	K562	blood:
5	chr6:44152329..44155208-chr6:44155507..44158419,2	K562	blood:
6	chr6:44139575..44142093-chr6:44153792..44155730,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124608	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9462972	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931987	chr6:43624625-44350167	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	201 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs4711777	TREML4	cis	parietal	SCAN
rs4711777	CUL9	cis	parietal	SCAN
rs4711777	KIAA0240	cis	parietal	SCAN
rs4711777	SLC35B2	cis	cerebellum	SCAN
rs4711777	TDRD6	cis	parietal	SCAN

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44151800-44154600	Enhancers	Stomach Mucosa	stomach
2	chr6:44153000-44154400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:44153000-44160200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:44153200-44154400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:44153200-44154400	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:44153200-44154400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr6:44153200-44154400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr6:44153200-44154400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr6:44153200-44154600	Enhancers	Fetal Thymus	thymus
10	chr6:44153200-44155200	Enhancers	HUVEC	blood vessel
11	chr6:44153600-44154400	Enhancers	H1 Cell Line	embryonic stem cell
12	chr6:44153600-44154400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:44153600-44154400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr6:44153600-44154400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr6:44153600-44154400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr6:44153600-44154400	Enhancers	Adipose Nuclei	Adipose
17	chr6:44153600-44154600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:44153600-44154600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr6:44153600-44154600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr6:44153600-44154600	Enhancers	K562	blood
21	chr6:44153800-44154400	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr6:44153800-44154400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:44153800-44154400	Enhancers	H9 Cell Line	embryonic stem cell
24	chr6:44153800-44154400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:44153800-44154400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
26	chr6:44153800-44154400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:44153800-44154400	Enhancers	Fetal Heart	heart
28	chr6:44153800-44154400	Enhancers	Fetal Kidney	kidney
29	chr6:44153800-44154400	Enhancers	Left Ventricle	heart
30	chr6:44153800-44154400	Enhancers	Right Atrium	heart
31	chr6:44153800-44154400	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:44153800-44154400	Enhancers	Spleen	Spleen
33	chr6:44153800-44154400	Enhancers	GM12878-XiMat	blood
34	chr6:44153800-44154400	Flanking Active TSS	HepG2	liver
35	chr6:44153800-44154400	Enhancers	HSMMtube	muscle
36	chr6:44153800-44154600	Enhancers	Fetal Muscle Trunk	muscle
37	chr6:44153800-44154600	Enhancers	Fetal Muscle Leg	muscle
38	chr6:44153800-44155200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr6:44153800-44155200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:44154000-44154400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr6:44154000-44154600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr6:44154000-44163800	Weak transcription	Thymus	Thymus
43	chr6:44154200-44155000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr6:44154200-44160000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr6:44154200-44160200	Weak transcription	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links