Variant report

Variant	rs4711827
Chromosome Location	chr6:45780672-45780673
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45771711..45773826-chr6:45778233..45780719,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6921261	0.86[EUR][1000 genomes]
rs7746516	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7746680	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45779800-45780800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:45780000-45781800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:45780200-45781600	Enhancers	Brain Substantia Nigra	brain
4	chr6:45780200-45781600	Enhancers	Fetal Heart	heart
5	chr6:45780400-45781000	Enhancers	Brain Angular Gyrus	brain
6	chr6:45780400-45781000	Enhancers	Brain Germinal Matrix	brain
7	chr6:45780400-45781000	Bivalent Enhancer	Fetal Brain Male	brain
8	chr6:45780400-45781200	Enhancers	Fetal Lung	lung
9	chr6:45780400-45781200	Bivalent Enhancer	NHDF-Ad	bronchial
10	chr6:45780400-45781400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:45780400-45781400	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:45780400-45781400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr6:45780400-45781400	Enhancers	Left Ventricle	heart
14	chr6:45780400-45781600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr6:45780400-45781600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr6:45780400-45782000	Enhancers	Fetal Muscle Leg	muscle
17	chr6:45780400-45782200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr6:45780600-45780800	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr6:45780600-45781000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr6:45780600-45781000	Enhancers	Fetal Muscle Trunk	muscle
21	chr6:45780600-45781000	Enhancers	Fetal Stomach	stomach
22	chr6:45780600-45781000	Enhancers	Psoas Muscle	Psoas
23	chr6:45780600-45781200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:45780600-45781200	Enhancers	Fetal Kidney	kidney
25	chr6:45780600-45781800	Enhancers	Brain Anterior Caudate	brain

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