Variant report

Variant	rs4711916
Chromosome Location	chr6:48732841-48732842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:47755654..47756833-chr6:48732471..48733620,5	MCF-7	breast:
2	chr6:48055196..48056240-chr6:48732766..48733406,3	MCF-7	breast:
3	chr6:47755503..47756331-chr6:48732735..48733661,3	MCF-7	breast:
4	chr6:48055084..48055848-chr6:48732720..48733281,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13206024	0.90[ASN][1000 genomes]
rs1938174	0.80[ASN][1000 genomes]
rs1938205	0.92[ASN][1000 genomes]
rs2186208	0.80[ASN][1000 genomes]
rs28593678	0.80[ASN][1000 genomes]
rs35275869	0.90[ASN][1000 genomes]
rs4379291	0.80[ASN][1000 genomes]
rs62410744	0.97[ASN][1000 genomes]
rs62413160	0.80[ASN][1000 genomes]
rs9357582	0.95[ASN][1000 genomes]
rs9357583	0.80[ASN][1000 genomes]
rs9369813	0.99[ASN][1000 genomes]
rs9369816	0.92[ASN][1000 genomes]
rs9369818	0.80[ASN][1000 genomes]
rs9381697	0.97[ASN][1000 genomes]
rs9381701	0.92[ASN][1000 genomes]
rs9381704	0.80[ASN][1000 genomes]
rs9395407	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033151	chr6:48067287-48797029	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538217	chr6:48067287-48797029	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv949690	chr6:48595821-49289855	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:48730400-48733800	Enhancers	Fetal Lung	lung
2	chr6:48731400-48735800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:48732000-48733600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr6:48732000-48733800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr6:48732000-48733800	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:48732000-48734200	Enhancers	Hela-S3	cervix
7	chr6:48732000-48734800	Enhancers	NHEK	skin
8	chr6:48732000-48735000	Enhancers	NHLF	lung
9	chr6:48732200-48733000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:48732200-48733600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:48732200-48733800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr6:48732200-48734200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:48732200-48734800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:48732400-48733600	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:48732400-48734800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:48732600-48733600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:48732600-48733800	Enhancers	Stomach Mucosa	stomach
18	chr6:48732800-48733000	Enhancers	Fetal Brain Male	brain
19	chr6:48732800-48733200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr6:48732800-48733200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr6:48732800-48734800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:48732800-48735000	Enhancers	HMEC	breast

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