Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54547491..54552528-chr6:54710025..54715322,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1039694	0.82[CHB][hapmap]
rs10738113	1.00[CHB][hapmap]
rs1280715	0.90[ASN][1000 genomes]
rs1507111	1.00[CHB][hapmap]
rs1983141	1.00[CHB][hapmap]
rs2297805	0.82[CHB][hapmap]
rs4094928	1.00[CHB][hapmap]
rs4715471	1.00[CHB][hapmap]
rs6459022	0.82[CHB][hapmap]
rs6907631	1.00[CHB][hapmap]
rs6916459	0.82[CHB][hapmap]
rs6934405	0.82[CHB][hapmap]
rs7739195	1.00[CHB][hapmap]
rs7739425	1.00[CHB][hapmap]
rs7759470	1.00[CHB][hapmap]
rs7770733	1.00[CHB][hapmap]
rs7772650	0.82[CHB][hapmap]
rs9464125	0.82[CHB][hapmap]
rs9474955	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474956	1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9474976	0.82[CHB][hapmap]
rs9474984	0.82[CHB][hapmap]
rs9474985	0.82[CHB][hapmap]
rs962307	1.00[CHB][hapmap]
rs981683	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv1813954	chr6:54518364-54557296	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54546200-54548200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr6:54546400-54548200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:54546400-54548600	Enhancers	Hela-S3	cervix

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