Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14060177..14062658-chr6:14116712..14119541,2	MCF-7	breast:
2	chr6:14059223..14061375-chr6:14065918..14068718,2	K562	blood:

Variant related genes	Relation type
ENSG00000112149	Chromatin interaction

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10949221	0.83[CEU][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs6905903	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9358027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9476479	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027179	chr6:14058703-14223055	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14057200-14060400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:14058800-14060400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:14058800-14060400	Weak transcription	NH-A	brain
4	chr6:14059800-14061400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:14059800-14061600	Enhancers	Hela-S3	cervix
6	chr6:14060000-14060600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:14060000-14060600	Bivalent Enhancer	Brain Hippocampus Middle	brain
8	chr6:14060000-14060600	Enhancers	Esophagus	oesophagus
9	chr6:14060000-14060600	Bivalent Enhancer	Left Ventricle	heart
10	chr6:14060000-14060600	Enhancers	NHDF-Ad	bronchial
11	chr6:14060000-14060600	Flanking Active TSS	NHEK	skin
12	chr6:14060000-14061400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr6:14060000-14061600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr6:14060200-14060400	Bivalent Enhancer	Brain Substantia Nigra	brain
15	chr6:14060200-14060400	Flanking Bivalent TSS/Enh	HSMMtube	muscle
16	chr6:14060200-14060600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:14060200-14060600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:14060200-14060600	Enhancers	Lung	lung
19	chr6:14060200-14060600	Flanking Active TSS	HMEC	breast
20	chr6:14060200-14061000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:14060200-14061400	Enhancers	Liver	Liver

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