Variant report

Variant	rs4713501
Chromosome Location	chr6:11429737-11429738
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11427951..11430915-chr6:11435068..11437007,2	MCF-7	breast:
2	chr6:11415153..11417889-chr6:11429693..11432070,2	MCF-7	breast:
3	chr6:11415142..11417104-chr6:11428067..11431006,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233656	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4267940	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4510670	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4618520	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772068	0.88[CEU][hapmap]
rs9366787	0.88[CEU][hapmap]
rs9469070	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv432848	chr6:11371614-11560114	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv3340894	chr6:11425466-11429864	Enhancers Weak transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11423200-11431800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr6:11423400-11430200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:11423400-11430400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:11423400-11430600	Enhancers	NHDF-Ad	bronchial
5	chr6:11423400-11434200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:11423600-11430400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:11423600-11432200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:11423600-11435200	Enhancers	HepG2	liver
9	chr6:11423800-11435600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:11424000-11430400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:11424600-11430600	Enhancers	Placenta	Placenta
12	chr6:11424600-11430800	Enhancers	Osteobl	bone
13	chr6:11424800-11430800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr6:11425000-11432200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:11425200-11429800	Enhancers	HUVEC	blood vessel
16	chr6:11425600-11430600	Enhancers	NHLF	lung
17	chr6:11425600-11436200	Enhancers	Adipose Nuclei	Adipose
18	chr6:11425800-11430600	Enhancers	HSMMtube	muscle
19	chr6:11426400-11431800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:11427000-11430200	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:11427000-11432800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:11427400-11433400	Enhancers	NH-A	brain
23	chr6:11427600-11430600	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr6:11427600-11430800	Enhancers	Primary B cells from peripheral blood	blood
25	chr6:11427600-11430800	Enhancers	HSMM	muscle
26	chr6:11427800-11429800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr6:11427800-11430000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr6:11427800-11430200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr6:11427800-11430400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:11427800-11430600	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr6:11427800-11430600	Enhancers	Skeletal Muscle Male	skeletal muscle
32	chr6:11427800-11432000	Weak transcription	Aorta	Aorta
33	chr6:11428000-11430000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr6:11428000-11430000	Enhancers	Placenta Amnion	Placenta Amnion
35	chr6:11428000-11430600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr6:11428000-11430600	Enhancers	Fetal Kidney	kidney
37	chr6:11428000-11434800	Weak transcription	Psoas Muscle	Psoas
38	chr6:11428000-11438000	Weak transcription	Esophagus	oesophagus
39	chr6:11428200-11430000	Enhancers	Rectal Mucosa Donor 31	rectum
40	chr6:11428200-11430600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr6:11428200-11430600	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr6:11428200-11430600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr6:11428200-11431000	Enhancers	Primary B cells from cord blood	blood
44	chr6:11428200-11432400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:11428200-11434400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr6:11428400-11429800	Enhancers	Primary T cells from cord blood	blood
47	chr6:11428400-11429800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr6:11428400-11430600	Enhancers	Fetal Thymus	thymus
49	chr6:11428600-11429800	Weak transcription	Lung	lung
50	chr6:11428600-11430000	Flanking Active TSS	GM12878-XiMat	blood

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