Variant report

Variant	rs4713873
Chromosome Location	chr6:11766363-11766364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12665068	0.87[JPT][hapmap]
rs210896	0.87[JPT][hapmap]
rs210903	0.87[JPT][hapmap]
rs2235404	0.87[JPT][hapmap];0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2235417	0.87[JPT][hapmap]
rs2235421	0.87[JPT][hapmap]
rs3765253	0.84[JPT][hapmap]
rs4713856	0.81[CHB][hapmap]
rs4713857	0.81[CHB][hapmap]
rs760787	0.80[CHD][hapmap]
rs9296142	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11755800-11768400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:11759400-11769600	Weak transcription	Lung	lung
3	chr6:11760600-11770600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:11762000-11767200	Enhancers	HSMMtube	muscle
5	chr6:11762400-11768200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:11762600-11767200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:11762600-11770600	Weak transcription	Spleen	Spleen
8	chr6:11763000-11768000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:11763000-11769200	Weak transcription	Colonic Mucosa	Colon
10	chr6:11763200-11773400	Enhancers	HUVEC	blood vessel
11	chr6:11764400-11766800	Weak transcription	Fetal Stomach	stomach
12	chr6:11764400-11767000	Weak transcription	Stomach Mucosa	stomach
13	chr6:11764400-11767600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:11764400-11770600	Weak transcription	Esophagus	oesophagus
15	chr6:11764400-11770600	Weak transcription	Left Ventricle	heart
16	chr6:11764400-11770600	Weak transcription	Right Atrium	heart
17	chr6:11764600-11766400	Weak transcription	Gastric	stomach
18	chr6:11764600-11766600	Weak transcription	Fetal Lung	lung
19	chr6:11764600-11766600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr6:11764600-11766800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:11764800-11769600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:11764800-11769600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:11765000-11766400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:11765000-11766600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr6:11765000-11769000	Weak transcription	Small Intestine	intestine
26	chr6:11765000-11770600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr6:11765200-11767800	Enhancers	NHEK	skin
28	chr6:11765200-11768200	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr6:11765400-11768400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:11765600-11768200	Strong transcription	Rectal Mucosa Donor 29	rectum
31	chr6:11765800-11766400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:11765800-11766600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:11765800-11767600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:11765800-11767600	Enhancers	Pancreas	Pancrea
35	chr6:11765800-11767800	Enhancers	K562	blood
36	chr6:11765800-11768000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr6:11765800-11768000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr6:11765800-11768000	Enhancers	H9 Cell Line	embryonic stem cell
39	chr6:11765800-11768000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr6:11765800-11768000	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr6:11765800-11768200	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr6:11765800-11768200	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr6:11765800-11768400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:11765800-11768400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr6:11765800-11770200	Enhancers	Hela-S3	cervix
46	chr6:11765800-11770600	Enhancers	HSMM	muscle
47	chr6:11765800-11770600	Enhancers	Osteobl	bone
48	chr6:11765800-11773000	Enhancers	NH-A	brain
49	chr6:11765800-11773600	Enhancers	NHDF-Ad	bronchial
50	chr6:11765800-11773600	Enhancers	NHLF	lung

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