Variant report

Variant	rs4713874
Chromosome Location	chr6:35460207-35460208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:35284828..35287502-chr6:35459599..35462310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023892	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1475774	1.00[CEU][hapmap]
rs16878591	1.00[CEU][hapmap]
rs16878806	1.00[CEU][hapmap]
rs16879378	1.00[CEU][hapmap]
rs28675670	1.00[CEU][hapmap]
rs3777746	0.89[JPT][hapmap]
rs4713908	1.00[CEU][hapmap]
rs59511315	0.81[EUR][1000 genomes]
rs59736270	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528351	chr6:35377922-35465786	Flanking Active TSS Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	69 gene(s)	inside rSNPs	diseases
2	nsv519370	chr6:35378778-35537406	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
3	nsv984463	chr6:35432948-35477634	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	67 gene(s)	inside rSNPs	diseases
4	nsv602911	chr6:35457396-35465483	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases
5	esv1843819	chr6:35457396-35465749	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
6	esv1851060	chr6:35457396-35465749	Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
7	esv1794339	chr6:35457396-35465786	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
8	esv1800978	chr6:35457396-35465786	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
9	esv1803037	chr6:35457396-35465786	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
10	esv1837448	chr6:35457396-35465786	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	23 gene(s)	inside rSNPs	diseases
11	nsv462909	chr6:35457396-35502202	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
12	nsv602912	chr6:35457396-35502202	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
13	nsv602913	chr6:35457842-35465422	Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35443600-35462000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:35452400-35461400	Enhancers	NH-A	brain
3	chr6:35454600-35461200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:35455200-35461400	Enhancers	Fetal Lung	lung
5	chr6:35455400-35460800	Enhancers	K562	blood
6	chr6:35455400-35463400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:35456000-35461600	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:35456200-35461600	Weak transcription	GM12878-XiMat	blood
9	chr6:35456200-35462000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:35456200-35464400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr6:35456400-35460400	Enhancers	NHEK	skin
12	chr6:35456400-35461800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:35456800-35462000	Weak transcription	Primary B cells from cord blood	blood
14	chr6:35457200-35460400	Enhancers	Esophagus	oesophagus
15	chr6:35457200-35460600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:35457200-35461200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:35457200-35461600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:35457200-35461800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:35457200-35463200	Enhancers	Ovary	ovary
20	chr6:35457200-35463400	Enhancers	Lung	lung
21	chr6:35457200-35463600	Enhancers	Pancreas	Pancrea
22	chr6:35457600-35463000	Enhancers	NHDF-Ad	bronchial
23	chr6:35457800-35462800	Flanking Active TSS	Stomach Smooth Muscle	stomach
24	chr6:35458000-35460800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
25	chr6:35458200-35460400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr6:35458200-35460400	Enhancers	Stomach Mucosa	stomach
27	chr6:35458200-35460600	Enhancers	Gastric	stomach
28	chr6:35458200-35461000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
29	chr6:35458200-35461000	Bivalent Enhancer	Fetal Thymus	thymus
30	chr6:35458200-35461200	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr6:35458200-35461600	Flanking Active TSS	Colon Smooth Muscle	Colon
32	chr6:35458200-35462200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:35458400-35460400	Active TSS	Duodenum Smooth Muscle	Duodenum
34	chr6:35458400-35461000	Enhancers	HepG2	liver
35	chr6:35458400-35461600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr6:35458400-35462000	Enhancers	Colonic Mucosa	Colon
37	chr6:35458400-35463400	Enhancers	Cortex derived primary cultured neurospheres	brain
38	chr6:35458400-35463800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr6:35458400-35463800	Weak transcription	Brain Angular Gyrus	brain
40	chr6:35458600-35461000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr6:35458600-35461000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:35458600-35461200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:35458600-35461200	Enhancers	NHLF	lung
44	chr6:35458600-35461400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr6:35458600-35461400	Enhancers	HSMM	muscle
46	chr6:35458600-35461600	Weak transcription	Osteobl	bone
47	chr6:35458600-35461800	Enhancers	Rectal Mucosa Donor 29	rectum
48	chr6:35458600-35463000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:35458600-35463000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr6:35458600-35463200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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