Variant report

Variant	rs4713920
Chromosome Location	chr6:35678619-35678620
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:35676282..35678828-chr6:35694562..35696516,2	MCF-7	breast:
2	chr6:35677116..35678875-chr6:35688132..35689859,2	K562	blood:
3	chr6:35677094..35679566-chr6:35684897..35686689,2	K562	blood:
4	chr6:35677736..35680462-chr6:35681912..35686397,4	K562	blood:
5	chr6:35678386..35681633-chr6:35693027..35696348,6	K562	blood:
6	chr6:35678386..35681604-chr6:35693027..35696401,6	K562	blood:

Variant related genes	Relation type
ENSG00000096060	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs2395635	0.81[EUR][1000 genomes]
rs2766532	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2817031	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4711426	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4711427	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4711429	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713916	0.80[EUR][1000 genomes]
rs4713918	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4713919	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4713921	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457842	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6900592	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6905674	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6909804	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9394313	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9394314	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9462104	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758048	chr6:35463741-35806504	Genic enhancers Weak transcription Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2759420	chr6:35463741-35806504	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv602924	chr6:35505311-35750299	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3430300	chr6:35549151-35959004	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
5	nsv821646	chr6:35604428-35802594	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
6	nsv885802	chr6:35621781-35787417	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	34 gene(s)	inside rSNPs	diseases
7	nsv885803	chr6:35621781-35805133	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
8	nsv885804	chr6:35621781-35809776	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
9	nsv428143	chr6:35637083-35806504	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
10	nsv1028947	chr6:35670521-35714541	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4713920	FKBP5	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:35667200-35681200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr6:35670000-35684600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr6:35671800-35680000	Weak transcription	Small Intestine	intestine
4	chr6:35671800-35683200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr6:35675600-35680400	Weak transcription	Gastric	stomach
6	chr6:35676000-35680200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:35677800-35679000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:35677800-35679000	Enhancers	Fetal Thymus	thymus
9	chr6:35677800-35683400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:35678000-35679000	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:35678000-35680400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr6:35678000-35680400	Weak transcription	Spleen	Spleen
13	chr6:35678000-35685000	Weak transcription	Esophagus	oesophagus
14	chr6:35678200-35685200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:35678200-35685200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr6:35678200-35686000	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr6:35678400-35678800	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr6:35678400-35678800	Weak transcription	Pancreas	Pancrea
19	chr6:35678400-35679400	Weak transcription	HepG2	liver
20	chr6:35678400-35680200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:35678400-35680200	Weak transcription	Thymus	Thymus
22	chr6:35678400-35681200	Weak transcription	K562	blood
23	chr6:35678400-35686800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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