Variant report

Variant	rs4714024
Chromosome Location	chr6:36906985-36906986
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2293393	0.86[ASN][1000 genomes]
rs449840	0.83[ASN][1000 genomes]
rs6457963	0.83[ASN][1000 genomes]
rs8472	0.89[ASN][1000 genomes]
rs9380626	0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030015	chr6:36818510-37104446	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv916833	chr6:36826524-37029833	Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4714024	FGD2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36892800-36915600	Weak transcription	Pancreas	Pancrea
2	chr6:36896200-36914200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:36896200-36915400	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:36896400-36914200	Weak transcription	Brain Substantia Nigra	brain
5	chr6:36897200-36907200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:36898600-36922200	Weak transcription	Right Atrium	heart
7	chr6:36904000-36907200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr6:36905000-36907200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:36905000-36908400	Enhancers	Fetal Heart	heart
10	chr6:36906000-36907200	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:36906000-36907200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:36906200-36908000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:36906400-36907200	Enhancers	NHDF-Ad	bronchial
14	chr6:36906400-36907400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:36906600-36908000	Enhancers	Hela-S3	cervix
16	chr6:36906600-36908800	Enhancers	Fetal Thymus	thymus
17	chr6:36906600-36908800	Enhancers	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links