Variant report

Variant	rs4714150
Chromosome Location	chr6:12054115-12054116
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:12013746..12017618-chr6:12051917..12056205,4	K562	blood:
2	chr6:12049044..12051863-chr6:12053146..12055413,2	K562	blood:
3	chr6:12031473..12034779-chr6:12051135..12055032,3	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12196128	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12210300	0.80[JPT][hapmap]
rs1475356	1.00[CEU][hapmap];0.94[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1570989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4291087	0.81[ASN][1000 genomes]
rs6925772	0.81[CEU][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs6934047	0.99[ASN][1000 genomes]
rs9296244	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs9349054	0.81[CEU][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs9369032	0.81[CEU][hapmap]
rs9470844	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9470854	0.99[ASN][1000 genomes]
rs956598	0.81[CEU][hapmap]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:12034800-12061000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:12040200-12060800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:12040400-12058800	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:12040400-12059600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:12041000-12060800	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr6:12045600-12056000	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr6:12045600-12058200	Weak transcription	Small Intestine	intestine
8	chr6:12045600-12058600	Weak transcription	A549	lung
9	chr6:12045600-12058800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:12045600-12059800	Weak transcription	Left Ventricle	heart
11	chr6:12045600-12059800	Weak transcription	Psoas Muscle	Psoas
12	chr6:12045600-12061000	Weak transcription	Fetal Thymus	thymus
13	chr6:12045600-12061000	Weak transcription	Pancreas	Pancrea
14	chr6:12045600-12061200	Weak transcription	Gastric	stomach
15	chr6:12045600-12065800	Weak transcription	Aorta	Aorta
16	chr6:12045600-12066200	Weak transcription	HSMM	muscle
17	chr6:12045600-12066400	Weak transcription	Hela-S3	cervix
18	chr6:12045800-12066000	Weak transcription	HUVEC	blood vessel
19	chr6:12046000-12060800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:12046600-12054400	Enhancers	Primary B cells from peripheral blood	blood
21	chr6:12047800-12054200	Enhancers	Primary B cells from cord blood	blood
22	chr6:12047800-12058800	Weak transcription	Esophagus	oesophagus
23	chr6:12047800-12059800	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:12048000-12060800	Weak transcription	Fetal Intestine Small	intestine
25	chr6:12048000-12061200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr6:12048200-12056000	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr6:12048200-12058400	Weak transcription	Liver	Liver
28	chr6:12048200-12058400	Weak transcription	NHEK	skin
29	chr6:12048200-12060800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr6:12048200-12062800	Weak transcription	K562	blood
31	chr6:12048400-12058400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:12048600-12060800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr6:12048600-12060800	Weak transcription	Fetal Intestine Large	intestine
34	chr6:12048600-12061000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr6:12048600-12061200	Weak transcription	Fetal Stomach	stomach
36	chr6:12050600-12065800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr6:12050600-12066000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr6:12050800-12054200	Enhancers	Primary T cells from cord blood	blood
39	chr6:12051200-12061000	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr6:12051200-12061000	Weak transcription	Lung	lung
41	chr6:12051400-12054200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
42	chr6:12052600-12060800	Weak transcription	Thymus	Thymus
43	chr6:12052600-12061000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:12053000-12060800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr6:12053200-12058200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr6:12053200-12058200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
47	chr6:12053400-12057600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr6:12053400-12058200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr6:12053400-12058800	Weak transcription	Colon Smooth Muscle	Colon
50	chr6:12053400-12060800	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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