Variant report

Variant	rs4714856
Chromosome Location	chr6:45490743-45490744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:45490175..45491700-chr6:45519334..45521574,2	MCF-7	breast:
2	chr6:45483286..45485568-chr6:45489315..45491541,2	K562	blood:
3	chr6:45488190..45490871-chr6:45499883..45502171,2	K562	blood:
4	chr6:45489352..45491036-chr6:45501412..45503775,2	MCF-7	breast:
5	chr6:45489161..45491336-chr6:45493728..45495620,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1004130	1.00[ASW][hapmap]
rs10498760	1.00[ASW][hapmap]
rs11968177	1.00[ASW][hapmap]
rs17209874	1.00[ASW][hapmap]
rs17288376	1.00[ASW][hapmap]
rs3805818	1.00[ASW][hapmap]
rs7751427	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv427755	chr6:45474631-45627025	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv1019561	chr6:45485826-45535222	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv538214	chr6:45485826-45535222	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45465000-45521600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr6:45466800-45497200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:45479000-45500000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr6:45481000-45500200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:45481400-45500200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:45481400-45514600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:45482000-45490800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:45482000-45500000	Weak transcription	NHDF-Ad	bronchial
9	chr6:45482400-45494600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr6:45482600-45500200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:45482600-45503600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr6:45482800-45514800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:45484400-45509400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr6:45484400-45514600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:45486400-45491800	Weak transcription	Hela-S3	cervix
16	chr6:45487000-45490800	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:45487800-45490800	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr6:45488200-45490800	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr6:45488400-45499600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr6:45488600-45495600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:45488800-45499200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:45488800-45500000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr6:45489000-45504200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr6:45489000-45521800	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:45489200-45490800	Strong transcription	HSMM	muscle
26	chr6:45489400-45491800	Weak transcription	NH-A	brain
27	chr6:45489600-45490800	Strong transcription	Osteobl	bone
28	chr6:45489600-45492000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr6:45489600-45492600	Weak transcription	Stomach Mucosa	stomach
30	chr6:45489600-45493400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr6:45489600-45494800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:45489800-45490800	Strong transcription	Muscle Satellite Cultured Cells	--
33	chr6:45489800-45495600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr6:45489800-45500000	Weak transcription	Fetal Lung	lung
35	chr6:45490000-45490800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
36	chr6:45490000-45493400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr6:45490400-45491000	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr6:45490400-45500000	Weak transcription	HSMMtube	muscle
39	chr6:45490600-45491800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:45490600-45492000	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr6:45490600-45492200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr6:45490600-45493000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr6:45490600-45494400	Weak transcription	Dnd41	blood
44	chr6:45490600-45496600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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