Variant report

Variant	rs4715167
Chromosome Location	chr6:13220322-13220323
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13215378..13217758-chr6:13218972..13222173,4	K562	blood:
2	chr6:13219509..13222376-chr6:13224285..13225985,2	MCF-7	breast:
3	chr6:13216098..13217758-chr6:13220085..13222173,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1008462	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1014608	0.85[CEU][hapmap]
rs10948546	1.00[CEU][hapmap];0.92[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12205644	0.82[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];0.88[CHD][hapmap];0.95[GIH][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13211846	0.85[CEU][hapmap]
rs2840336	1.00[CEU][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs371122	0.83[AMR][1000 genomes]
rs4711939	0.88[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4715156	0.96[ASN][1000 genomes]
rs4715166	1.00[ASW][hapmap];0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715169	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6458720	0.88[CEU][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.90[TSI][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6928740	0.88[CEU][hapmap];0.94[JPT][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7749528	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9942440	0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4715167	ERVFRDE1	cis	cerebellum	SCAN

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13182000-13230000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:13184000-13220800	Weak transcription	Brain Germinal Matrix	brain
3	chr6:13203200-13230200	Weak transcription	Fetal Stomach	stomach
4	chr6:13206400-13229800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:13206400-13230000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:13208200-13239800	Weak transcription	Brain Substantia Nigra	brain
7	chr6:13208400-13230200	Weak transcription	Brain Cingulate Gyrus	brain
8	chr6:13212400-13229800	Weak transcription	Right Ventricle	heart
9	chr6:13213400-13230000	Weak transcription	Fetal Brain Female	brain
10	chr6:13214000-13227400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr6:13217800-13222600	Weak transcription	Aorta	Aorta
12	chr6:13217800-13230000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:13217800-13230000	Weak transcription	Spleen	Spleen
14	chr6:13217800-13242400	Weak transcription	Pancreas	Pancrea
15	chr6:13218200-13227800	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:13218200-13230200	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:13218200-13235000	Weak transcription	Adipose Nuclei	Adipose
18	chr6:13218400-13241000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr6:13218600-13222400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:13218600-13227800	Weak transcription	Left Ventricle	heart
21	chr6:13218600-13230000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr6:13218600-13234400	Weak transcription	HSMM	muscle
23	chr6:13218800-13222600	Weak transcription	Right Atrium	heart
24	chr6:13218800-13228200	Weak transcription	Fetal Intestine Small	intestine
25	chr6:13218800-13229800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:13218800-13230200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr6:13219000-13222400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:13219000-13222600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:13219000-13230000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr6:13219200-13220400	Weak transcription	Fetal Heart	heart
31	chr6:13219600-13220400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr6:13219600-13221000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr6:13219800-13221400	Strong transcription	Brain Anterior Caudate	brain
34	chr6:13219800-13222600	Weak transcription	Lung	lung
35	chr6:13219800-13229600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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