Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11751405	0.84[AMR][1000 genomes]
rs12192061	0.91[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap]
rs12202919	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12211623	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1353707	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1605674	0.82[AMR][1000 genomes]
rs17574067	0.81[AMR][1000 genomes]
rs17635304	0.87[LWK][hapmap]
rs2297983	0.91[GIH][hapmap];0.96[MEX][hapmap];0.84[TSI][hapmap];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2297986	0.91[GIH][hapmap];0.86[MEX][hapmap];0.82[TSI][hapmap]
rs2840121	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3777655	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3798276	0.89[GIH][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4415156	0.81[AMR][1000 genomes]
rs62396368	0.81[AMR][1000 genomes]
rs7775058	0.84[AMR][1000 genomes]
rs9349702	0.84[AMR][1000 genomes]
rs9349706	0.87[LWK][hapmap];0.95[MKK][hapmap]
rs9370282	0.84[AMR][1000 genomes]
rs9370286	0.89[GIH][hapmap];0.96[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9370288	1.00[ASW][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.81[TSI][hapmap];0.92[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs9395931	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067663	chr6:53796341-54449718	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv529158	chr6:53796341-54449718	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv885888	chr6:54132353-54266032	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2762594	chr6:54159146-54168766	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54167600-54168800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:54168400-54168800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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