Variant report

Variant	rs4718559
Chromosome Location	chr7:66867876-66867877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66857902..66861234-chr7:66864878..66868630,3	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11760794	0.90[ASN][1000 genomes]
rs11760843	0.90[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs11760899	0.90[ASN][1000 genomes]
rs11762397	0.90[ASN][1000 genomes]
rs11763894	0.85[ASN][1000 genomes]
rs11768598	0.95[ASN][1000 genomes]
rs11769438	0.82[ASN][1000 genomes]
rs11770307	0.92[ASN][1000 genomes]
rs11771920	0.84[ASN][1000 genomes]
rs11772041	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs11772331	0.87[ASN][1000 genomes]
rs11773173	0.87[ASN][1000 genomes]
rs11977723	0.81[EUR][1000 genomes]
rs11982022	0.85[EUR][1000 genomes]
rs12698575	0.87[ASN][1000 genomes]
rs13226941	0.90[CHB][hapmap];0.87[ASN][1000 genomes]
rs13241524	0.87[ASN][1000 genomes]
rs13241865	0.87[ASN][1000 genomes]
rs17137359	0.87[ASN][1000 genomes]
rs1968150	0.90[ASN][1000 genomes]
rs34037266	0.90[ASN][1000 genomes]
rs34671876	0.87[ASN][1000 genomes]
rs35307336	0.83[ASN][1000 genomes]
rs35565843	0.93[ASN][1000 genomes]
rs35715970	0.90[ASN][1000 genomes]
rs36146582	0.95[ASN][1000 genomes]
rs4236211	0.97[ASN][1000 genomes]
rs4590320	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4717364	0.87[ASN][1000 genomes]
rs4718534	0.87[ASN][1000 genomes]
rs4718536	0.87[ASN][1000 genomes]
rs4718560	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55777645	0.87[ASN][1000 genomes]
rs62466443	0.87[ASN][1000 genomes]
rs62467577	0.93[ASN][1000 genomes]
rs6956666	0.93[ASN][1000 genomes]
rs6960865	0.87[ASN][1000 genomes]
rs6963583	0.87[ASN][1000 genomes]
rs71565103	0.85[ASN][1000 genomes]
rs71565104	0.85[ASN][1000 genomes]
rs7341400	0.84[ASN][1000 genomes]
rs7786846	0.95[ASN][1000 genomes]
rs7788177	0.87[ASN][1000 genomes]
rs7804093	0.95[ASN][1000 genomes]
rs887715	0.85[ASN][1000 genomes]
rs9443	0.87[ASN][1000 genomes]
rs956523	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888330	chr7:66502171-66877880	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
2	nsv1031147	chr7:66811313-66922350	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1025049	chr7:66823977-66906930	Bivalent Enhancer Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv33523	chr7:66855435-66958898	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66867400-66868200	Enhancers	K562	blood

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