Variant report

Variant	rs4723267
Chromosome Location	chr7:3953920-3953921
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3947932..3950368-chr7:3952794..3955461,2	MCF-7	breast:
2	chr7:3953782..3957860-chr7:3959035..3961864,3	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1013492	0.83[ASN][1000 genomes]
rs10227007	0.96[CEU][hapmap];0.88[JPT][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10230104	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10240160	0.95[CEU][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs10260999	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10264360	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10277771	1.00[CHB][hapmap]
rs11977815	0.91[CEU][hapmap];0.80[AMR][1000 genomes]
rs12530629	0.84[ASN][1000 genomes]
rs12701279	0.96[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12701280	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12701281	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12701282	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12701283	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12701284	0.95[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12701287	0.81[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12701291	0.91[CEU][hapmap];0.93[JPT][hapmap];0.81[ASN][1000 genomes]
rs12701293	0.84[ASN][1000 genomes]
rs12701296	0.91[CEU][hapmap];0.93[JPT][hapmap];0.85[ASN][1000 genomes]
rs12701305	0.90[CHB][hapmap]
rs12701311	0.82[CEU][hapmap]
rs17134054	0.90[CEU][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs17134098	0.82[CHB][hapmap]
rs2010279	0.91[CEU][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2016180	0.96[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2040937	0.91[CEU][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs2044224	0.91[CEU][hapmap];0.84[CHB][hapmap];0.91[AMR][1000 genomes]
rs2044225	0.88[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2068368	0.91[CEU][hapmap];0.83[CHB][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3735305	0.81[AMR][1000 genomes]
rs3801066	0.91[CHB][hapmap]
rs3801067	0.91[CHB][hapmap]
rs4720116	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4720128	1.00[CHB][hapmap]
rs4723268	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs4723269	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4723270	0.86[CEU][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4723275	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4723277	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4723284	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6462476	0.96[CEU][hapmap];0.84[CHB][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6951851	0.96[CEU][hapmap];0.86[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6965800	0.90[CHB][hapmap]
rs6978757	0.90[CHB][hapmap]
rs7784194	0.95[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7789580	0.95[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7805988	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1025497	chr7:3905444-4176032	Enhancers Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv538686	chr7:3905444-4176032	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv433014	chr7:3910039-4054769	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv518377	chr7:3939055-3978342	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1030082	chr7:3941203-3986403	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1020222	chr7:3946655-3985756	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1027500	chr7:3949954-3986403	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3901200-3959600	Weak transcription	Pancreas	Pancrea
2	chr7:3936800-3974200	Weak transcription	Aorta	Aorta
3	chr7:3948200-3955000	Weak transcription	Spleen	Spleen
4	chr7:3950600-3955600	Weak transcription	Brain Angular Gyrus	brain
5	chr7:3950600-3955800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr7:3951000-3955400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:3951000-3955600	Weak transcription	Brain Substantia Nigra	brain
8	chr7:3951000-3955800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr7:3951200-3954600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr7:3951600-3954000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr7:3952200-3957800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr7:3952200-3959400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr7:3952200-3960600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr7:3952400-3955200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:3952400-3955400	Weak transcription	NHEK	skin
16	chr7:3952400-3955600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:3952400-3955600	Weak transcription	NH-A	brain
18	chr7:3952400-3955800	Weak transcription	Adipose Nuclei	Adipose
19	chr7:3952400-3955800	Weak transcription	Brain Anterior Caudate	brain
20	chr7:3952400-3963200	Weak transcription	Lung	lung
21	chr7:3952600-3956000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr7:3952600-3956200	Weak transcription	Primary B cells from cord blood	blood
23	chr7:3952800-3957000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr7:3952800-3958000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:3953000-3955600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:3953000-3959000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr7:3953400-3956000	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr7:3953400-3957400	Enhancers	HepG2	liver
29	chr7:3953400-3957800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr7:3953600-3954200	Enhancers	Fetal Brain Female	brain
31	chr7:3953600-3954200	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr7:3953600-3954200	Flanking Active TSS	Fetal Lung	lung
33	chr7:3953600-3954800	Enhancers	Fetal Muscle Leg	muscle
34	chr7:3953600-3954800	Enhancers	Placenta	Placenta
35	chr7:3953800-3954000	Enhancers	Fetal Brain Male	brain
36	chr7:3953800-3954200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links