Variant report

Variant	rs4723291
Chromosome Location	chr7:33551998-33551999
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:33544530..33546422-chr7:33550567..33553490,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000122507	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10232000	0.83[CHB][hapmap]
rs12674093	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13245082	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17170271	0.84[CHB][hapmap]
rs17794801	0.85[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2041417	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016416	chr7:33241443-33559477	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933237	chr7:33470390-33574046	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv933018	chr7:33506325-33707270	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830945	chr7:33526648-33670592	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:33534200-33552400	Weak transcription	Pancreas	Pancrea
2	chr7:33537000-33552200	Weak transcription	Aorta	Aorta
3	chr7:33540800-33568600	Weak transcription	Left Ventricle	heart
4	chr7:33541200-33554600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr7:33541400-33567200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:33542400-33574200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr7:33543000-33557000	Weak transcription	Gastric	stomach
8	chr7:33543400-33555000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:33543600-33552800	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr7:33543600-33574200	Weak transcription	Ovary	ovary
11	chr7:33543800-33555800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr7:33544000-33552000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr7:33544000-33552000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr7:33544200-33552400	Weak transcription	Psoas Muscle	Psoas
15	chr7:33545800-33554800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr7:33547000-33579400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr7:33547400-33557000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr7:33547600-33557800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr7:33550600-33552400	Enhancers	Fetal Lung	lung
20	chr7:33551800-33552000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:33551800-33554200	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links