Variant report

Variant	rs4723903
Chromosome Location	chr7:39835759-39835760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10231605	0.82[ASN][1000 genomes]
rs12111962	0.82[ASN][1000 genomes]
rs1964239	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2008803	0.81[ASN][1000 genomes]
rs34326443	0.81[ASN][1000 genomes]
rs3873649	0.82[ASN][1000 genomes]
rs4723906	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6462946	0.80[ASN][1000 genomes]
rs6462948	0.82[ASN][1000 genomes]
rs6462949	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71536648	0.81[ASN][1000 genomes]
rs71536651	0.85[ASN][1000 genomes]
rs73379510	0.80[ASN][1000 genomes]
rs9770188	0.84[AMR][1000 genomes]
rs9770199	0.88[ASN][1000 genomes]
rs9770412	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9770818	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427777	chr7:39726513-39936904	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv887973	chr7:39772654-40110720	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv970820	chr7:39797964-39839303	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv5708	chr7:39814330-39855535	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv981627	chr7:39819869-39837441	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv887974	chr7:39827400-39956829	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:39794200-39837400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:39810600-39837200	Weak transcription	Brain Substantia Nigra	brain
3	chr7:39811000-39835800	Weak transcription	Brain Germinal Matrix	brain
4	chr7:39812400-39837400	Weak transcription	Fetal Intestine Large	intestine
5	chr7:39812400-39837600	Weak transcription	Spleen	Spleen
6	chr7:39821400-39839000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr7:39822800-39836200	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:39828800-39836400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr7:39830400-39836600	Weak transcription	Primary B cells from peripheral blood	blood
10	chr7:39830800-39836000	Strong transcription	Fetal Intestine Small	intestine
11	chr7:39831000-39839800	Weak transcription	Right Ventricle	heart
12	chr7:39831400-39838200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:39831800-39836200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr7:39831800-39837400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr7:39831800-39837400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:39831800-39837600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr7:39831800-39838800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:39831800-39838800	Weak transcription	Ovary	ovary
19	chr7:39832000-39836200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:39832000-39837600	Weak transcription	Pancreas	Pancrea
21	chr7:39832200-39836000	Weak transcription	Placenta	Placenta
22	chr7:39833200-39835800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:39833200-39838200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:39833200-39842400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr7:39833400-39835800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr7:39833400-39837600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:39833600-39835800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr7:39833600-39836800	Weak transcription	Fetal Stomach	stomach
29	chr7:39833600-39837400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:39833600-39837800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:39833600-39838200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:39833600-39839000	Weak transcription	Primary monocytes fromperipheralblood	blood
33	chr7:39833600-39845000	Weak transcription	Esophagus	oesophagus
34	chr7:39833800-39837000	Weak transcription	Gastric	stomach
35	chr7:39834000-39835800	Weak transcription	Lung	lung
36	chr7:39834200-39837600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:39835400-39836000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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