Variant report

Variant	rs4725901
Chromosome Location	chr7:150154871-150154872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150154830..150157825-chr7:150166560..150169292,2	K562	blood:
2	chr7:150149201..150150977-chr7:150153948..150156004,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs28699652	1.00[ASN][1000 genomes]
rs34639818	1.00[ASN][1000 genomes]
rs35644663	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4725886	1.00[ASN][1000 genomes]
rs56190733	1.00[ASN][1000 genomes]
rs62501473	1.00[ASN][1000 genomes]
rs62501488	1.00[ASN][1000 genomes]
rs71537965	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71539834	1.00[ASN][1000 genomes]
rs73172720	1.00[ASN][1000 genomes]
rs867819	1.00[ASN][1000 genomes]
rs998927	1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034409	chr7:149844639-150447071	Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv608990	chr7:149961274-150707488	Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv1015582	chr7:149967986-150285104	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1017368	chr7:150016952-150655773	Bivalent Enhancer ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv539195	chr7:150016952-150655773	Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
6	esv1819714	chr7:150055837-150154944	Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
7	nsv1025129	chr7:150146593-150266217	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150150200-150159000	Weak transcription	Thymus	Thymus
2	chr7:150150800-150156800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:150151200-150155000	Genic enhancers	Primary monocytes fromperipheralblood	blood
4	chr7:150151200-150162000	Weak transcription	Right Ventricle	heart
5	chr7:150151400-150162000	Weak transcription	HUVEC	blood vessel
6	chr7:150151600-150156400	Weak transcription	Liver	Liver
7	chr7:150151600-150157000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr7:150151600-150157600	Weak transcription	Left Ventricle	heart
9	chr7:150152200-150155000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr7:150152600-150156000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr7:150153600-150155000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr7:150153600-150156400	Enhancers	HMEC	breast
13	chr7:150153600-150157000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:150153800-150155000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:150153800-150155000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr7:150153800-150155000	Weak transcription	Adipose Nuclei	Adipose
17	chr7:150153800-150156400	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr7:150153800-150157600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr7:150154000-150155000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr7:150154000-150155000	Weak transcription	Primary T helper cells fromperipheralblood	blood
21	chr7:150154000-150155000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr7:150154200-150155400	Enhancers	NHEK	skin
23	chr7:150154200-150155800	Strong transcription	Primary T cells from cord blood	blood
24	chr7:150154200-150162400	Weak transcription	Fetal Thymus	thymus
25	chr7:150154400-150155600	Enhancers	Primary T cells fromperipheralblood	blood
26	chr7:150154400-150155600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
27	chr7:150154800-150155200	Enhancers	Spleen	Spleen
28	chr7:150154800-150155400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr7:150154800-150155600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:150154800-150156400	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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