Variant report

Variant	rs4726004
Chromosome Location	chr7:150873566-150873567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:150873546-150873849	K562	blood:	n/a	n/a
2	MAX	chr7:150873484-150874205	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150863087..150865291-chr7:150871915..150873592,2	K562	blood:
2	chr7:150722965..150724842-chr7:150872237..150873917,2	MCF-7	breast:
3	chr7:150775965..150777696-chr7:150873040..150874759,2	K562	blood:
4	chr7:150872087..150875042-chr7:150939202..150940753,2	K562	blood:
5	chr7:150873472..150877097-chr7:150970719..150974066,3	K562	blood:

No data

No data

No data

Variant related genes	Relation type
GBX1	TF binding region
ENSG00000164900	Chromatin interaction
ENSG00000164896	Chromatin interaction
ENSG00000082014	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1972754	0.87[AMR][1000 genomes]
rs4725997	0.87[AMR][1000 genomes]
rs4725998	1.00[ASW][hapmap];0.85[JPT][hapmap];0.87[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs57978000	1.00[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs72617359	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs72617360	1.00[AMR][1000 genomes]
rs72617361	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs72617362	1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv539198	chr7:150643928-150879259	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
3	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
4	nsv889478	chr7:150732812-150889527	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
5	nsv831188	chr7:150735204-150912875	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
6	nsv889486	chr7:150775306-150891641	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	nsv609034	chr7:150830015-150893629	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150865600-150877800	Weak transcription	Right Atrium	heart
2	chr7:150868600-150877800	Weak transcription	Left Ventricle	heart
3	chr7:150872000-150877800	Genic enhancers	Skeletal Muscle Male	skeletal muscle
4	chr7:150872600-150873600	Strong transcription	Right Ventricle	heart
5	chr7:150873000-150873600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
6	chr7:150873000-150873600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr7:150873200-150873600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
8	chr7:150873200-150873600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
9	chr7:150873200-150873600	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr7:150873200-150873800	Genic enhancers	Skeletal Muscle Female	skeletal muscle
11	chr7:150873400-150873800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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