Variant report

Variant	rs4726010
Chromosome Location	chr7:150948000-150948001
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:150938276..150940538-chr7:150946762..150948405,2	MCF-7	breast:
2	chr7:150928662..150932139-chr7:150946772..150952684,6	MCF-7	breast:
3	chr7:150863343..150865061-chr7:150947610..150949922,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164900	Chromatin interaction
ENSG00000033100	Chromatin interaction
ENSG00000082014	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1870238	0.91[ASN][1000 genomes]
rs2242141	0.87[ASN][1000 genomes]
rs2256864	0.94[ASN][1000 genomes]
rs2429248	0.97[ASN][1000 genomes]
rs2446065	0.89[ASN][1000 genomes]
rs2487152	0.97[ASN][1000 genomes]
rs2487154	0.91[ASN][1000 genomes]
rs2487155	0.89[ASN][1000 genomes]
rs2608292	0.91[ASN][1000 genomes]
rs2608293	0.89[ASN][1000 genomes]
rs2792434	0.88[ASN][1000 genomes]
rs2792435	0.85[ASN][1000 genomes]
rs2792436	0.85[ASN][1000 genomes]
rs2792444	0.86[ASN][1000 genomes]
rs4725398	0.93[ASN][1000 genomes]
rs4726009	0.88[ASN][1000 genomes]
rs6464134	0.88[ASN][1000 genomes]
rs758249	0.92[ASN][1000 genomes]
rs921987	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv889488	chr7:150926775-150955765	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4726010	ABCF2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150946000-150948800	Flanking Active TSS	Stomach Smooth Muscle	stomach
2	chr7:150946200-150948400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr7:150946200-150948600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr7:150946400-150948400	Flanking Active TSS	Fetal Brain Female	brain
5	chr7:150946400-150948600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:150946400-150948800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr7:150946600-150948000	Enhancers	Placenta	Placenta
8	chr7:150946600-150948200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:150946600-150948200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr7:150946600-150948200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
11	chr7:150946600-150948200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:150946600-150948200	Enhancers	NHDF-Ad	bronchial
13	chr7:150946600-150948200	Enhancers	NHLF	lung
14	chr7:150946600-150948400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:150946600-150948400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:150946600-150948400	Enhancers	Brain Substantia Nigra	brain
17	chr7:150946600-150948400	Enhancers	Esophagus	oesophagus
18	chr7:150946600-150948400	Enhancers	Lung	lung
19	chr7:150946600-150948400	Weak transcription	HUVEC	blood vessel
20	chr7:150946600-150948400	Enhancers	NH-A	brain
21	chr7:150946600-150948600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr7:150946600-150948600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr7:150946600-150948600	Enhancers	Gastric	stomach
24	chr7:150946600-150948600	Enhancers	Spleen	Spleen
25	chr7:150946600-150949200	Bivalent Enhancer	Fetal Thymus	thymus
26	chr7:150946800-150948000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
27	chr7:150946800-150948200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
28	chr7:150946800-150948200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
29	chr7:150946800-150948200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:150946800-150948200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr7:150946800-150948200	Enhancers	Muscle Satellite Cultured Cells	--
32	chr7:150946800-150948200	Enhancers	Brain Anterior Caudate	brain
33	chr7:150946800-150948200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr7:150946800-150948200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr7:150946800-150948200	Enhancers	Left Ventricle	heart
36	chr7:150946800-150948200	Enhancers	Ovary	ovary
37	chr7:150946800-150948400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
38	chr7:150946800-150948400	Bivalent Enhancer	H9 Cell Line	embryonic stem cell
39	chr7:150946800-150948400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
40	chr7:150946800-150948400	Enhancers	A549	lung
41	chr7:150946800-150948400	Weak transcription	HMEC	breast
42	chr7:150946800-150948600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr7:150947000-150948000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:150947000-150948000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr7:150947000-150948200	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
46	chr7:150947000-150948200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr7:150947000-150948200	Enhancers	Brain Germinal Matrix	brain
48	chr7:150947000-150948200	Bivalent Enhancer	Colonic Mucosa	Colon
49	chr7:150947000-150948200	Enhancers	Fetal Lung	lung
50	chr7:150947000-150948200	Enhancers	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links