Variant report

Variant	rs4727104
Chromosome Location	chr7:85158702-85158703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11525841	0.82[EUR][1000 genomes]
rs1980389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2103088	0.92[EUR][1000 genomes]
rs2177409	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2462071	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2463686	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6959166	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73201589	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916645	chr7:84678606-85420011	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv869255	chr7:84678606-85444155	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3327487	chr7:84901505-85320690	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv888649	chr7:85099898-85356773	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2761345	chr7:85104681-85187726	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1034789	chr7:85137730-85175007	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv888650	chr7:85138665-85267174	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1021810	chr7:85148963-85194663	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv2758123	chr7:85153322-85318042	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	esv2759542	chr7:85153322-85318042	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv831051	chr7:85154948-85321916	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:85157800-85158800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:85157800-85159400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr7:85157800-85159800	Enhancers	NHLF	lung
4	chr7:85158000-85158800	Enhancers	Fetal Lung	lung
5	chr7:85158000-85159600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr7:85158000-85160000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:85158200-85158800	Enhancers	Fetal Stomach	stomach
8	chr7:85158200-85158800	Weak transcription	Small Intestine	intestine
9	chr7:85158200-85159200	Enhancers	Adipose Nuclei	Adipose
10	chr7:85158200-85159600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr7:85158200-85159600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr7:85158200-85159800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr7:85158400-85158800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:85158400-85158800	Enhancers	Osteobl	bone
15	chr7:85158400-85159200	Enhancers	Liver	Liver
16	chr7:85158400-85159200	Enhancers	Stomach Mucosa	stomach
17	chr7:85158400-85159200	Enhancers	Hela-S3	cervix
18	chr7:85158400-85159400	Flanking Active TSS	NHDF-Ad	bronchial
19	chr7:85158600-85159200	Weak transcription	Duodenum Mucosa	Duodenum
20	chr7:85158600-85159600	Enhancers	NH-A	brain

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